diff --git a/misc-scripts/xref_mapping/xref_config.ini b/misc-scripts/xref_mapping/xref_config.ini index 05b4a2deb06811b9c8dadfb438938fb307f84467..cfa63da73192989a1b10834236a02de8c67ce6b8 100644 --- a/misc-scripts/xref_mapping/xref_config.ini +++ b/misc-scripts/xref_mapping/xref_config.ini @@ -24,7 +24,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Anopheles_gambiae/EMBL/EMBL_MMC1_20k_v1.txt +data_uri = file:Anopheles_gambiae/EMBL/EMBL_MMC1_20k_v1.txt [source ARRAY_EMBL_MMC2_12k_v1::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -35,7 +35,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Anopheles_gambiae/EMBL/EMBL_MMC2_12k_v1.txt +data_uri = file:Anopheles_gambiae/EMBL/EMBL_MMC2_12k_v1.txt [source ARRAY_JHSPH_AG_GAMBER_15k_v1::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -46,7 +46,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Anopheles_gambiae/JHSPH/JHSPH_AG_GAMBER_15k_v1.txt +data_uri = file:Anopheles_gambiae/JHSPH/JHSPH_AG_GAMBER_15k_v1.txt [source ARRAY_JHSPH_GAM3_0_21k_v1::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -57,7 +57,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Anopheles_gambiae/JHSPH/JHSPH_GAM3.0_21k_v1.txt +data_uri = file:Anopheles_gambiae/JHSPH/JHSPH_GAM3.0_21k_v1.txt [source ARRAY_JHU_AEG1.0_20k_v1::aedes_aegypti] # Used by aedes_aegypti @@ -68,7 +68,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Aedes_aegypti/JHU/JHU_AEG1.0_20k_v1.txt +data_uri = file:Aedes_aegypti/JHU/JHU_AEG1.0_20k_v1.txt [source ARRAY_LIV_AEGDETOX_0_25k_v1::aedes_aegypti] # Used by aedes_aegypti @@ -79,7 +79,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Aedes_aegypti/LIV/LIV_AEGDETOX_0.25k_v1.txt +data_uri = file:Aedes_aegypti/LIV/LIV_AEGDETOX_0.25k_v1.txt [source ARRAY_LIV_GAMDETOX_0_25k_v1::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -90,7 +90,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Anopheles_gambiae/LIV/LIV_GAMDETOX_0.25k_v1.txt +data_uri = file:Anopheles_gambiae/LIV/LIV_GAMDETOX_0.25k_v1.txt [source ARRAY_LIV_GAMDETOX_0_25k_v2::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -101,7 +101,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Anopheles_gambiae/LIV/LIV_GAMDETOX_0.25k_v2.txt +data_uri = file:Anopheles_gambiae/LIV/LIV_GAMDETOX_0.25k_v2.txt [source ARRAY_ND_TIGRTC_9_6K_v1::aedes_aegypti] # Used by aedes_aegypti @@ -112,7 +112,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Aedes_aegypti/ND/ND_TIGRTC_9.6k_v1.txt +data_uri = file:Aedes_aegypti/ND/ND_TIGRTC_9.6k_v1.txt [source ARRAY_UCR_GillMgMT_0_2K_v2::aedes_aegypti] # Used by aedes_aegypti @@ -123,7 +123,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Aedes_aegypti/UCR/UCR_GillMgMT_0.2k_v2.txt +data_uri = file:Aedes_aegypti/UCR/UCR_GillMgMT_0.2k_v2.txt [source AedesGenBank::aedes_aegypti] # Used by aedes_aegypti @@ -134,7 +134,7 @@ priority = 1 prio_descr = parser = AedesGenBankParser release_uri = -data_uri = file://AedesGenBank/Aedes_proteinID.fa +data_uri = file:AedesGenBank/Aedes_proteinID.fa [source AgilentCGH::homo_sapiens] # Used by homo_sapiens @@ -145,7 +145,7 @@ priority = 1 prio_descr = parser = AgilentParser release_uri = -data_uri = file://AgilentCGH/HumanCGH.fasta +data_uri = file:AgilentCGH/HumanCGH.fasta [source AgilentProbe::danio_rerio] # Used by danio_rerio @@ -156,7 +156,7 @@ priority = 1 prio_descr = parser = AgilentParser release_uri = -data_uri = file://AgilentProbe/ZebrafishExpression.fasta +data_uri = file:AgilentProbe/ZebrafishExpression.fasta [source AgilentProbe::homo_sapiens] # Used by homo_sapiens @@ -167,7 +167,7 @@ priority = 1 prio_descr = parser = AgilentParser release_uri = -data_uri = file://AgilentProbe/HumanExpression.fasta +data_uri = file:AgilentProbe/HumanExpression.fasta [source AgilentProbe::mus_musculus] # Used by mus_musculus @@ -178,7 +178,7 @@ priority = 1 prio_descr = parser = AgilentParser release_uri = -data_uri = file://AgilentProbe/MouseExpression.fasta +data_uri = file:AgilentProbe/MouseExpression.fasta [source AgilentProbe::rattus_norvegicus] # Used by rattus_norvegicus @@ -189,7 +189,7 @@ priority = 1 prio_descr = parser = AgilentParser release_uri = -data_uri = file://AgilentProbe/RatExpression.fasta +data_uri = file:AgilentProbe/RatExpression.fasta [source Anopheles_symbol::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -200,7 +200,7 @@ priority = 1 prio_descr = parser = AnophelesSymbolParser release_uri = -data_uri = file://Anopheles_symbol/GeneName_translation_UniqID.txt +data_uri = file:Anopheles_symbol/GeneName_translation_UniqID.txt [source CCDS::MULTI] # Used by homo_sapiens, mus_musculus @@ -211,7 +211,7 @@ priority = 1 prio_descr = parser = CCDSParser release_uri = -data_uri = file://CCDS/CCDS.txt +data_uri = file:CCDS/CCDS.txt [source Celera_Pep::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -222,7 +222,7 @@ priority = 1 prio_descr = parser = CeleraProteinParser release_uri = -data_uri = file://Celera_Pep/consensus-proteins_xref.fasta +data_uri = file:Celera_Pep/consensus-proteins_xref.fasta [source Celera_Trans::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -233,7 +233,7 @@ priority = 1 prio_descr = parser = CeleraTranscriptParser release_uri = -data_uri = file://Celera_trans/consensus-transcripts_xref.fasta +data_uri = file:Celera_trans/consensus-transcripts_xref.fasta [source Codelink::homo_sapiens] # Used by homo_sapiens @@ -244,7 +244,7 @@ priority = 1 prio_descr = parser = CodelinkParser release_uri = -data_uri = file://Codelink/GEHC_Amersham_CodeLink_HWG_300026.fna +data_uri = file:Codelink/GEHC_Amersham_CodeLink_HWG_300026.fna [source Codelink::mus_musculus] # Used by mus_musculus @@ -255,7 +255,7 @@ priority = 1 prio_descr = parser = CodelinkParser release_uri = -data_uri = file://Codelink/GEHC_Amersham_CodeLink_MWG_300033.fna +data_uri = file:Codelink/GEHC_Amersham_CodeLink_MWG_300033.fna [source Codelink::rattus_norvegicus] # Used by rattus_norvegicus @@ -266,7 +266,7 @@ priority = 1 prio_descr = parser = CodelinkParser release_uri = -data_uri = file://Codelink/GEHC_Amersham_CodeLink_RWG_300031.fna +data_uri = file:Codelink/GEHC_Amersham_CodeLink_RWG_300031.fna [source EntrezGene::MULTI] # Used by aedes_aegypti, anopheles_gambiae, anopheles_gambiae_strain, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, drosophila_melanogaster, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, oryctolagus_cuniculus, oryzias_latipes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis @@ -365,7 +365,7 @@ priority = 2 prio_descr = ccds parser = HUGO_CCDSParser release_uri = -data_uri = file://HUGO/CCDS_TO_HUGO +data_uri = file:HUGO/CCDS_TO_HUGO [source HUGO::homo_sapiens#01] # Used by homo_sapiens @@ -387,7 +387,7 @@ priority = 1 prio_descr = havana parser = HUGO_ENSGParser release_uri = -data_uri = file://HUGO/HUGO_TO_ENSG +data_uri = file:HUGO/HUGO_TO_ENSG [source IMGT/GENE_DB::MULTI] # Used by homo_sapiens, mus_musculus @@ -398,7 +398,20 @@ priority = 1 prio_descr = parser = SegmentParser release_uri = -data_uri = file://Segments/Seg_xrefs.txt +data_uri = file:Segments/Seg_xrefs.txt + +[source IMGT/LIGM_DB::MULTI] +# Special source used by SegmentParser. This source is not +# used directly by any species. Data is created by the source +# 'IMGT/GENE_DB::MULTI'. +name = IMGT/LIGM_DB +download = N +order = 40 +priority = 1 +prio_descr = +parser = SegmentParser +release_uri = +data_uri = file:Segments/Seg_xrefs.txt [source IPI::danio_rerio] # Used by danio_rerio @@ -453,7 +466,7 @@ priority = 1 prio_descr = parser = FastaParser release_uri = -data_uri = file://Illumina_V1/Human_WG-6.fa +data_uri = file:Illumina_V1/Human_WG-6.fa [source Illumina_V1::mus_musculus] # Used by mus_musculus @@ -464,7 +477,7 @@ priority = 1 prio_descr = parser = FastaParser release_uri = -data_uri = file://Illumina_V1/Mouse-6_V1.fa +data_uri = file:Illumina_V1/Mouse-6_V1.fa [source Illumina_V2::homo_sapiens] # Used by homo_sapiens @@ -475,7 +488,7 @@ priority = 1 prio_descr = parser = IlluminaParser release_uri = -data_uri = file://Illumina_V2/Human-6_v2_sequence.csv +data_uri = file:Illumina_V2/Human-6_v2_sequence.csv [source Interpro::MULTI] # Used by aedes_aegypti, anopheles_gambiae, anopheles_gambiae_strain, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, drosophila_melanogaster, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis @@ -520,7 +533,7 @@ priority = 1 prio_descr = parser = OTTTParser release_uri = -data_uri = file://OTTT/OTTT.txt +data_uri = file:OTTT/OTTT.txt [source RGD::rattus_norvegicus] # Used by rattus_norvegicus @@ -542,22 +555,7 @@ priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi1.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi10.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi11.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi12.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi13.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi14.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi15.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi16.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi2.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi3.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi4.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi5.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi6.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi7.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi8.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi9.rna.fna.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi*.rna.fna.gz [source RefSeq_dna::MULTI-invertebrate] # Used by drosophila_melanogaster @@ -568,23 +566,7 @@ priority = 1 prio_descr = parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate1.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate10.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate11.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate12.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate13.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate14.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate15.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate16.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate17.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate2.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate3.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate4.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate5.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate6.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate7.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate8.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate9.rna.fna.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate*.rna.fna.gz [source RefSeq_dna::MULTI-predicted] # Special source used in RefSeqParser. No species uses this source. @@ -605,68 +587,7 @@ priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian1.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian10.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian11.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian12.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian13.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian14.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian15.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian16.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian17.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian18.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian19.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian2.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian20.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian21.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian22.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian23.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian24.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian25.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian26.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian27.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian28.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian29.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian3.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian30.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian31.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian32.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian33.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian34.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian35.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian36.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian37.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian38.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian39.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian4.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian40.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian41.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian42.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian43.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian44.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian45.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian46.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian47.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian48.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian49.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian5.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian50.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian51.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian52.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian53.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian54.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian55.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian56.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian57.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian58.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian59.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian6.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian60.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian61.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian62.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian7.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian8.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian9.rna.fna.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian*.rna.fna.gz [source RefSeq_dna::MULTI-vertebrate_other] # Used by ciona_intestinalis, ciona_savignyi, gasterosteus_aculeatus, oryzias_latipes, takifugu_rubripes, xenopus_tropicalis @@ -677,13 +598,7 @@ priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other1.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other4.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other5.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other6.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other7.rna.fna.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other*.rna.fna.gz [source RefSeq_dna::apis_mellifera] # Used by apis_mellifera @@ -760,7 +675,7 @@ priority = 1 prio_descr = ccds parser = RefSeq_CCDSParser release_uri = -data_uri = file://RefSeq_dna/CCDS_to_REFSEQ +data_uri = file:RefSeq_dna/CCDS_to_REFSEQ [source RefSeq_dna::homo_sapiens#01] # Used by homo_sapiens @@ -804,22 +719,7 @@ priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi1.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi10.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi11.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi12.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi13.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi14.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi15.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi16.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi2.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi3.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi4.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi5.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi6.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi7.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi8.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi9.protein.gpff.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi*.protein.gpff.gz [source RefSeq_peptide::MULTI-invertebrate] # Used by caenorhabditis_elegans, ciona_savignyi, drosophila_melanogaster @@ -830,23 +730,7 @@ priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate1.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate10.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate11.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate12.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate13.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate14.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate15.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate16.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate17.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate2.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate3.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate4.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate5.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate6.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate7.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate8.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate9.protein.gpff.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate*.protein.gpff.gz [source RefSeq_peptide::MULTI-predicted] # Special source used in RefSeqGPFFParser. No species uses this source. @@ -867,68 +751,7 @@ priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian1.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian10.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian11.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian12.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian13.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian14.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian15.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian16.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian17.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian18.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian19.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian2.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian20.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian21.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian22.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian23.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian24.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian25.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian26.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian27.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian28.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian29.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian3.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian30.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian31.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian32.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian33.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian34.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian35.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian36.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian37.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian38.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian39.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian4.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian40.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian41.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian42.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian43.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian44.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian45.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian46.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian47.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian48.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian49.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian5.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian50.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian51.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian52.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian53.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian54.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian55.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian56.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian57.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian58.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian59.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian6.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian60.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian61.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian62.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian7.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian8.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian9.protein.gpff.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian*.protein.gpff.gz [source RefSeq_peptide::MULTI-vertebrate_other] # Used by ciona_intestinalis, ciona_savignyi, gasterosteus_aculeatus, oryzias_latipes, takifugu_rubripes, xenopus_tropicalis @@ -939,13 +762,7 @@ priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other1.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other4.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other5.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other6.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other7.protein.gpff.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other*.protein.gpff.gz [source RefSeq_peptide::apis_mellifera] # Used by apis_mellifera @@ -1138,7 +955,7 @@ order = 30 priority = 1 prio_descr = parser = UniGeneParser -release_uri = +release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_intestinalis/Cin.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_intestinalis/Cin.data.gz @@ -1150,7 +967,7 @@ order = 30 priority = 1 prio_descr = parser = UniGeneParser -release_uri = +release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_savignyi/Csa.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_savignyi/Csa.data.gz @@ -1174,7 +991,7 @@ order = 30 priority = 1 prio_descr = parser = UniGeneParser -release_uri = +release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Drosophila_melanogaster/Dm.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Drosophila_melanogaster/Dm.data.gz @@ -1222,7 +1039,7 @@ order = 30 priority = 1 prio_descr = parser = UniGeneParser -release_uri = +release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Myotis_lucifugus/Mlu.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Myotis_lucifugus/Mlu.data.gz @@ -1246,7 +1063,7 @@ order = 30 priority = 1 prio_descr = parser = UniGeneParser -release_uri = +release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Takifugu_rubripes/Tru.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Takifugu_rubripes/Tru.data.gz @@ -1366,7 +1183,7 @@ priority = 1 prio_descr = parser = XenopusJamboreeParser release_uri = -data_uri = file:///ecs4/work4/mc2/Xenopus/jamboree/names/names_seq.fa +data_uri = file:/ecs4/work4/mc2/Xenopus/jamboree/names/names_seq.fa [source ZFIN_ID::danio_rerio] # Used by danio_rerio @@ -1434,18 +1251,7 @@ priority = 1 prio_descr = parser = Flybase_dmel_GFFv3_Parser release_uri = -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-2L-r4.2.1.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-2R-r4.2.1.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-3L-r4.2.1.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-3R-r4.2.1.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-4-r4.2.1.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-X-r4.2.1.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current_hetchr/gff/dmel-2h-hetr32b2.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current_hetchr/gff/dmel-3h-hetr32b2.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current_hetchr/gff/dmel-4h-hetr32b2.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current_hetchr/gff/dmel-U-hetr32b2.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current_hetchr/gff/dmel-Xh-hetr32b2.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current_hetchr/gff/dmel-Yh-hetr32b2.gff.gz +data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-all-*.gff.gz [source ncRNA::MULTI] # Used by bos_taurus, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, erinaceus_europaeus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, oryctolagus_cuniculus, oryzias_latipes, rattus_norvegicus, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis @@ -1456,7 +1262,7 @@ priority = 1 prio_descr = parser = ncRNAParser release_uri = -data_uri = file://ncRNA/ncRNA.txt +data_uri = file:ncRNA/ncRNA.txt [source wormpep_id::caenorhabditis_elegans] # Used by caenorhabditis_elegans