From 9c1d9ba6250c5d923fa137c8353ad51ab209a030 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Andreas=20Kusalananda=20K=C3=A4h=C3=A4ri?= <ak4@sanger.ac.uk> Date: Tue, 22 May 2007 10:18:54 +0000 Subject: [PATCH] Change 'file://' URIs into 'file:'. Add special source 'IMGT/LIGM_DB' (assumed to exist by SegmentParser, but not explicitly connected with any species). Collapse lists of data URIs by means of FTP file name globbing, especially for the various RefSeq sources. Updated some URIs to point to new data (e.g. FlyBase for Drosophila). --- misc-scripts/xref_mapping/xref_config.ini | 314 +++++----------------- 1 file changed, 60 insertions(+), 254 deletions(-) diff --git a/misc-scripts/xref_mapping/xref_config.ini b/misc-scripts/xref_mapping/xref_config.ini index 05b4a2deb0..cfa63da731 100644 --- a/misc-scripts/xref_mapping/xref_config.ini +++ b/misc-scripts/xref_mapping/xref_config.ini @@ -24,7 +24,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Anopheles_gambiae/EMBL/EMBL_MMC1_20k_v1.txt +data_uri = file:Anopheles_gambiae/EMBL/EMBL_MMC1_20k_v1.txt [source ARRAY_EMBL_MMC2_12k_v1::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -35,7 +35,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Anopheles_gambiae/EMBL/EMBL_MMC2_12k_v1.txt +data_uri = file:Anopheles_gambiae/EMBL/EMBL_MMC2_12k_v1.txt [source ARRAY_JHSPH_AG_GAMBER_15k_v1::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -46,7 +46,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Anopheles_gambiae/JHSPH/JHSPH_AG_GAMBER_15k_v1.txt +data_uri = file:Anopheles_gambiae/JHSPH/JHSPH_AG_GAMBER_15k_v1.txt [source ARRAY_JHSPH_GAM3_0_21k_v1::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -57,7 +57,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Anopheles_gambiae/JHSPH/JHSPH_GAM3.0_21k_v1.txt +data_uri = file:Anopheles_gambiae/JHSPH/JHSPH_GAM3.0_21k_v1.txt [source ARRAY_JHU_AEG1.0_20k_v1::aedes_aegypti] # Used by aedes_aegypti @@ -68,7 +68,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Aedes_aegypti/JHU/JHU_AEG1.0_20k_v1.txt +data_uri = file:Aedes_aegypti/JHU/JHU_AEG1.0_20k_v1.txt [source ARRAY_LIV_AEGDETOX_0_25k_v1::aedes_aegypti] # Used by aedes_aegypti @@ -79,7 +79,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Aedes_aegypti/LIV/LIV_AEGDETOX_0.25k_v1.txt +data_uri = file:Aedes_aegypti/LIV/LIV_AEGDETOX_0.25k_v1.txt [source ARRAY_LIV_GAMDETOX_0_25k_v1::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -90,7 +90,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Anopheles_gambiae/LIV/LIV_GAMDETOX_0.25k_v1.txt +data_uri = file:Anopheles_gambiae/LIV/LIV_GAMDETOX_0.25k_v1.txt [source ARRAY_LIV_GAMDETOX_0_25k_v2::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -101,7 +101,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Anopheles_gambiae/LIV/LIV_GAMDETOX_0.25k_v2.txt +data_uri = file:Anopheles_gambiae/LIV/LIV_GAMDETOX_0.25k_v2.txt [source ARRAY_ND_TIGRTC_9_6K_v1::aedes_aegypti] # Used by aedes_aegypti @@ -112,7 +112,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Aedes_aegypti/ND/ND_TIGRTC_9.6k_v1.txt +data_uri = file:Aedes_aegypti/ND/ND_TIGRTC_9.6k_v1.txt [source ARRAY_UCR_GillMgMT_0_2K_v2::aedes_aegypti] # Used by aedes_aegypti @@ -123,7 +123,7 @@ priority = 1 prio_descr = parser = VbDirectParser release_uri = -data_uri = file://Aedes_aegypti/UCR/UCR_GillMgMT_0.2k_v2.txt +data_uri = file:Aedes_aegypti/UCR/UCR_GillMgMT_0.2k_v2.txt [source AedesGenBank::aedes_aegypti] # Used by aedes_aegypti @@ -134,7 +134,7 @@ priority = 1 prio_descr = parser = AedesGenBankParser release_uri = -data_uri = file://AedesGenBank/Aedes_proteinID.fa +data_uri = file:AedesGenBank/Aedes_proteinID.fa [source AgilentCGH::homo_sapiens] # Used by homo_sapiens @@ -145,7 +145,7 @@ priority = 1 prio_descr = parser = AgilentParser release_uri = -data_uri = file://AgilentCGH/HumanCGH.fasta +data_uri = file:AgilentCGH/HumanCGH.fasta [source AgilentProbe::danio_rerio] # Used by danio_rerio @@ -156,7 +156,7 @@ priority = 1 prio_descr = parser = AgilentParser release_uri = -data_uri = file://AgilentProbe/ZebrafishExpression.fasta +data_uri = file:AgilentProbe/ZebrafishExpression.fasta [source AgilentProbe::homo_sapiens] # Used by homo_sapiens @@ -167,7 +167,7 @@ priority = 1 prio_descr = parser = AgilentParser release_uri = -data_uri = file://AgilentProbe/HumanExpression.fasta +data_uri = file:AgilentProbe/HumanExpression.fasta [source AgilentProbe::mus_musculus] # Used by mus_musculus @@ -178,7 +178,7 @@ priority = 1 prio_descr = parser = AgilentParser release_uri = -data_uri = file://AgilentProbe/MouseExpression.fasta +data_uri = file:AgilentProbe/MouseExpression.fasta [source AgilentProbe::rattus_norvegicus] # Used by rattus_norvegicus @@ -189,7 +189,7 @@ priority = 1 prio_descr = parser = AgilentParser release_uri = -data_uri = file://AgilentProbe/RatExpression.fasta +data_uri = file:AgilentProbe/RatExpression.fasta [source Anopheles_symbol::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -200,7 +200,7 @@ priority = 1 prio_descr = parser = AnophelesSymbolParser release_uri = -data_uri = file://Anopheles_symbol/GeneName_translation_UniqID.txt +data_uri = file:Anopheles_symbol/GeneName_translation_UniqID.txt [source CCDS::MULTI] # Used by homo_sapiens, mus_musculus @@ -211,7 +211,7 @@ priority = 1 prio_descr = parser = CCDSParser release_uri = -data_uri = file://CCDS/CCDS.txt +data_uri = file:CCDS/CCDS.txt [source Celera_Pep::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -222,7 +222,7 @@ priority = 1 prio_descr = parser = CeleraProteinParser release_uri = -data_uri = file://Celera_Pep/consensus-proteins_xref.fasta +data_uri = file:Celera_Pep/consensus-proteins_xref.fasta [source Celera_Trans::anopheles_gambiae] # Used by anopheles_gambiae, anopheles_gambiae_strain @@ -233,7 +233,7 @@ priority = 1 prio_descr = parser = CeleraTranscriptParser release_uri = -data_uri = file://Celera_trans/consensus-transcripts_xref.fasta +data_uri = file:Celera_trans/consensus-transcripts_xref.fasta [source Codelink::homo_sapiens] # Used by homo_sapiens @@ -244,7 +244,7 @@ priority = 1 prio_descr = parser = CodelinkParser release_uri = -data_uri = file://Codelink/GEHC_Amersham_CodeLink_HWG_300026.fna +data_uri = file:Codelink/GEHC_Amersham_CodeLink_HWG_300026.fna [source Codelink::mus_musculus] # Used by mus_musculus @@ -255,7 +255,7 @@ priority = 1 prio_descr = parser = CodelinkParser release_uri = -data_uri = file://Codelink/GEHC_Amersham_CodeLink_MWG_300033.fna +data_uri = file:Codelink/GEHC_Amersham_CodeLink_MWG_300033.fna [source Codelink::rattus_norvegicus] # Used by rattus_norvegicus @@ -266,7 +266,7 @@ priority = 1 prio_descr = parser = CodelinkParser release_uri = -data_uri = file://Codelink/GEHC_Amersham_CodeLink_RWG_300031.fna +data_uri = file:Codelink/GEHC_Amersham_CodeLink_RWG_300031.fna [source EntrezGene::MULTI] # Used by aedes_aegypti, anopheles_gambiae, anopheles_gambiae_strain, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, drosophila_melanogaster, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, oryctolagus_cuniculus, oryzias_latipes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis @@ -365,7 +365,7 @@ priority = 2 prio_descr = ccds parser = HUGO_CCDSParser release_uri = -data_uri = file://HUGO/CCDS_TO_HUGO +data_uri = file:HUGO/CCDS_TO_HUGO [source HUGO::homo_sapiens#01] # Used by homo_sapiens @@ -387,7 +387,7 @@ priority = 1 prio_descr = havana parser = HUGO_ENSGParser release_uri = -data_uri = file://HUGO/HUGO_TO_ENSG +data_uri = file:HUGO/HUGO_TO_ENSG [source IMGT/GENE_DB::MULTI] # Used by homo_sapiens, mus_musculus @@ -398,7 +398,20 @@ priority = 1 prio_descr = parser = SegmentParser release_uri = -data_uri = file://Segments/Seg_xrefs.txt +data_uri = file:Segments/Seg_xrefs.txt + +[source IMGT/LIGM_DB::MULTI] +# Special source used by SegmentParser. This source is not +# used directly by any species. Data is created by the source +# 'IMGT/GENE_DB::MULTI'. +name = IMGT/LIGM_DB +download = N +order = 40 +priority = 1 +prio_descr = +parser = SegmentParser +release_uri = +data_uri = file:Segments/Seg_xrefs.txt [source IPI::danio_rerio] # Used by danio_rerio @@ -453,7 +466,7 @@ priority = 1 prio_descr = parser = FastaParser release_uri = -data_uri = file://Illumina_V1/Human_WG-6.fa +data_uri = file:Illumina_V1/Human_WG-6.fa [source Illumina_V1::mus_musculus] # Used by mus_musculus @@ -464,7 +477,7 @@ priority = 1 prio_descr = parser = FastaParser release_uri = -data_uri = file://Illumina_V1/Mouse-6_V1.fa +data_uri = file:Illumina_V1/Mouse-6_V1.fa [source Illumina_V2::homo_sapiens] # Used by homo_sapiens @@ -475,7 +488,7 @@ priority = 1 prio_descr = parser = IlluminaParser release_uri = -data_uri = file://Illumina_V2/Human-6_v2_sequence.csv +data_uri = file:Illumina_V2/Human-6_v2_sequence.csv [source Interpro::MULTI] # Used by aedes_aegypti, anopheles_gambiae, anopheles_gambiae_strain, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, drosophila_melanogaster, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis @@ -520,7 +533,7 @@ priority = 1 prio_descr = parser = OTTTParser release_uri = -data_uri = file://OTTT/OTTT.txt +data_uri = file:OTTT/OTTT.txt [source RGD::rattus_norvegicus] # Used by rattus_norvegicus @@ -542,22 +555,7 @@ priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi1.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi10.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi11.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi12.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi13.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi14.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi15.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi16.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi2.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi3.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi4.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi5.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi6.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi7.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi8.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi9.rna.fna.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi*.rna.fna.gz [source RefSeq_dna::MULTI-invertebrate] # Used by drosophila_melanogaster @@ -568,23 +566,7 @@ priority = 1 prio_descr = parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate1.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate10.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate11.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate12.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate13.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate14.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate15.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate16.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate17.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate2.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate3.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate4.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate5.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate6.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate7.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate8.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate9.rna.fna.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate*.rna.fna.gz [source RefSeq_dna::MULTI-predicted] # Special source used in RefSeqParser. No species uses this source. @@ -605,68 +587,7 @@ priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian1.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian10.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian11.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian12.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian13.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian14.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian15.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian16.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian17.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian18.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian19.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian2.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian20.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian21.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian22.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian23.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian24.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian25.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian26.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian27.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian28.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian29.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian3.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian30.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian31.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian32.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian33.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian34.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian35.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian36.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian37.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian38.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian39.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian4.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian40.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian41.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian42.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian43.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian44.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian45.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian46.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian47.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian48.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian49.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian5.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian50.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian51.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian52.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian53.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian54.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian55.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian56.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian57.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian58.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian59.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian6.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian60.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian61.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian62.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian7.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian8.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian9.rna.fna.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian*.rna.fna.gz [source RefSeq_dna::MULTI-vertebrate_other] # Used by ciona_intestinalis, ciona_savignyi, gasterosteus_aculeatus, oryzias_latipes, takifugu_rubripes, xenopus_tropicalis @@ -677,13 +598,7 @@ priority = 2 prio_descr = refseq parser = RefSeqParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other1.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.rna.fna.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other4.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other5.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other6.rna.fna.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other7.rna.fna.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other*.rna.fna.gz [source RefSeq_dna::apis_mellifera] # Used by apis_mellifera @@ -760,7 +675,7 @@ priority = 1 prio_descr = ccds parser = RefSeq_CCDSParser release_uri = -data_uri = file://RefSeq_dna/CCDS_to_REFSEQ +data_uri = file:RefSeq_dna/CCDS_to_REFSEQ [source RefSeq_dna::homo_sapiens#01] # Used by homo_sapiens @@ -804,22 +719,7 @@ priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi1.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi10.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi11.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi12.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi13.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi14.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi15.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi16.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi2.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi3.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi4.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi5.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi6.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi7.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi8.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi9.protein.gpff.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/fungi/fungi*.protein.gpff.gz [source RefSeq_peptide::MULTI-invertebrate] # Used by caenorhabditis_elegans, ciona_savignyi, drosophila_melanogaster @@ -830,23 +730,7 @@ priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate1.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate10.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate11.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate12.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate13.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate14.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate15.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate16.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate17.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate2.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate3.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate4.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate5.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate6.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate7.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate8.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate9.protein.gpff.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate*.protein.gpff.gz [source RefSeq_peptide::MULTI-predicted] # Special source used in RefSeqGPFFParser. No species uses this source. @@ -867,68 +751,7 @@ priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian1.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian10.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian11.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian12.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian13.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian14.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian15.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian16.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian17.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian18.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian19.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian2.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian20.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian21.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian22.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian23.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian24.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian25.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian26.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian27.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian28.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian29.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian3.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian30.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian31.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian32.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian33.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian34.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian35.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian36.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian37.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian38.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian39.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian4.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian40.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian41.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian42.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian43.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian44.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian45.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian46.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian47.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian48.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian49.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian5.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian50.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian51.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian52.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian53.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian54.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian55.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian56.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian57.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian58.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian59.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian6.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian60.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian61.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian62.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian7.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian8.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian9.protein.gpff.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian*.protein.gpff.gz [source RefSeq_peptide::MULTI-vertebrate_other] # Used by ciona_intestinalis, ciona_savignyi, gasterosteus_aculeatus, oryzias_latipes, takifugu_rubripes, xenopus_tropicalis @@ -939,13 +762,7 @@ priority = 1 prio_descr = parser = RefSeqGPFFParser release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other1.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other2.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other3.protein.gpff.gz -data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other4.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other5.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other6.protein.gpff.gz -#data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other7.protein.gpff.gz +data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/vertebrate_other*.protein.gpff.gz [source RefSeq_peptide::apis_mellifera] # Used by apis_mellifera @@ -1138,7 +955,7 @@ order = 30 priority = 1 prio_descr = parser = UniGeneParser -release_uri = +release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_intestinalis/Cin.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_intestinalis/Cin.data.gz @@ -1150,7 +967,7 @@ order = 30 priority = 1 prio_descr = parser = UniGeneParser -release_uri = +release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_savignyi/Csa.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Ciona_savignyi/Csa.data.gz @@ -1174,7 +991,7 @@ order = 30 priority = 1 prio_descr = parser = UniGeneParser -release_uri = +release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Drosophila_melanogaster/Dm.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Drosophila_melanogaster/Dm.data.gz @@ -1222,7 +1039,7 @@ order = 30 priority = 1 prio_descr = parser = UniGeneParser -release_uri = +release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Myotis_lucifugus/Mlu.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Myotis_lucifugus/Mlu.data.gz @@ -1246,7 +1063,7 @@ order = 30 priority = 1 prio_descr = parser = UniGeneParser -release_uri = +release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Takifugu_rubripes/Tru.seq.uniq.gz data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Takifugu_rubripes/Tru.data.gz @@ -1366,7 +1183,7 @@ priority = 1 prio_descr = parser = XenopusJamboreeParser release_uri = -data_uri = file:///ecs4/work4/mc2/Xenopus/jamboree/names/names_seq.fa +data_uri = file:/ecs4/work4/mc2/Xenopus/jamboree/names/names_seq.fa [source ZFIN_ID::danio_rerio] # Used by danio_rerio @@ -1434,18 +1251,7 @@ priority = 1 prio_descr = parser = Flybase_dmel_GFFv3_Parser release_uri = -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-2L-r4.2.1.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-2R-r4.2.1.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-3L-r4.2.1.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-3R-r4.2.1.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-4-r4.2.1.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-X-r4.2.1.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current_hetchr/gff/dmel-2h-hetr32b2.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current_hetchr/gff/dmel-3h-hetr32b2.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current_hetchr/gff/dmel-4h-hetr32b2.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current_hetchr/gff/dmel-U-hetr32b2.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current_hetchr/gff/dmel-Xh-hetr32b2.gff.gz -data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current_hetchr/gff/dmel-Yh-hetr32b2.gff.gz +data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-all-*.gff.gz [source ncRNA::MULTI] # Used by bos_taurus, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, erinaceus_europaeus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, oryctolagus_cuniculus, oryzias_latipes, rattus_norvegicus, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis @@ -1456,7 +1262,7 @@ priority = 1 prio_descr = parser = ncRNAParser release_uri = -data_uri = file://ncRNA/ncRNA.txt +data_uri = file:ncRNA/ncRNA.txt [source wormpep_id::caenorhabditis_elegans] # Used by caenorhabditis_elegans -- GitLab