From 9d1eb02957a4130cd3cafd8a7f5f4b8046ee8be1 Mon Sep 17 00:00:00 2001
From: Monika Komorowska <mk8@sanger.ac.uk>
Date: Thu, 22 Mar 2012 14:13:46 +0000
Subject: [PATCH] added ignore sql for EntrezGene xrefs with accessions like
'%LOC%'
---
misc-scripts/xref_mapping/XrefMapper/sus_scrofa.pm | 7 +++++++
1 file changed, 7 insertions(+)
diff --git a/misc-scripts/xref_mapping/XrefMapper/sus_scrofa.pm b/misc-scripts/xref_mapping/XrefMapper/sus_scrofa.pm
index 7e41d47aa5..bc153fdf5f 100644
--- a/misc-scripts/xref_mapping/XrefMapper/sus_scrofa.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/sus_scrofa.pm
@@ -77,6 +77,13 @@ SELECT object_xref_id
AND priority_description = 'protein_evidence_gt_2'
BIGN
+ $ignore{"EntrezGene/LOC"} =(<<BIGN);
+SELECT object_xref_id
+ FROM object_xref JOIN xref USING(xref_id) JOIN source USING(source_id)
+ WHERE ox_status = 'DUMP_OUT' AND name = 'EntrezGene'
+ AND accession = '%LOC%'
+BIGN
+
return [\@list,\%ignore];
}
--
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