From 9db63f68f4f276d2ff86364491c6ef957c41d437 Mon Sep 17 00:00:00 2001 From: Magali Ruffier <mr6@ebi.ac.uk> Date: Mon, 22 Feb 2016 11:51:14 +0000 Subject: [PATCH] retir goslim_goa xrefs --- misc-scripts/xref_mapping/xref_config.ini | 79 ----------------------- 1 file changed, 79 deletions(-) diff --git a/misc-scripts/xref_mapping/xref_config.ini b/misc-scripts/xref_mapping/xref_config.ini index 8894187970..51ad780d92 100644 --- a/misc-scripts/xref_mapping/xref_config.ini +++ b/misc-scripts/xref_mapping/xref_config.ini @@ -980,18 +980,6 @@ release_uri = ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/current_release_numbe data_uri = ftp://ftp.geneontology.org/pub/go/gene-associations/gene_association.zfin.gz data_uri = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz -[source goslim_goa::MULTI] -# Used by all -name = goslim_goa -download = Y -order = 120 -priority = 1 -prio_descr = main -parser = GOSlimParser -dependent_on = GO -release_uri = -data_uri = script:host=>ens-staging1,dbname=>ensembl_ontology_83, - [source goslim_goa::EG] # Used by Ensembl Genomes name = goslim_goa @@ -5169,7 +5157,6 @@ taxonomy_id = 9646 aliases = Panda, panda, giant panda, ailuropodamelanoleuca source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5190,7 +5177,6 @@ taxonomy_id = 8839 aliases = duck, mallard, mallard duck, mallard ducks, anas platyrhynchos, anas boschas, anas domesticus source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5210,7 +5196,6 @@ taxonomy_id = 28377 aliases = anole, green anole lizard, green anole, american anole, redthroated anole, anoliscarolinensis, anolis_carolinensis source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5426,7 +5411,6 @@ taxonomy_id = 7994 aliases = cave fish, Mexican tetra source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5683,7 +5667,6 @@ taxonomy_id = 9913 aliases = bostaurus, btaurus, cow source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5704,7 +5687,6 @@ taxonomy_id = 9483 aliases = Marmoset, marmoset, white-tufted-ear marmoset, callithrixjacchus, callithrix_jacchus source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5724,7 +5706,6 @@ taxonomy_id = 9615 aliases = canisfamiliaris, cfamiliaris, dog, doggy source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5745,7 +5726,6 @@ taxonomy_id = 10141 aliases = cavia porcellus,guinea_pig,guinea pig source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5765,7 +5745,6 @@ taxonomy_id = 60711 aliases = Chlorocebus sabeus,vervet monkey,African Green Monkey,AGM,vervet,chlorocebus_sabeus,Chlorocebus sabaeus source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5785,7 +5764,6 @@ taxonomy_id = 9358 aliases = sloth source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5807,7 +5785,6 @@ taxonomy_id = 7719 aliases = cintestinalis, cionaintestinalis, seasquirt source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5831,7 +5808,6 @@ taxonomy_id = 51511 aliases = ciona_savi, csav, savi source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5872,7 +5848,6 @@ taxonomy_id = 7955 aliases = danio, daniorerio, drerio, zebrafish source = EntrezGene::MULTI source = GO::danio_rerio -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5897,7 +5872,6 @@ taxonomy_id = 9361 aliases = armadillo, dasypusnovemcinctus, dnovemcinctus source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -5937,7 +5911,6 @@ taxonomy_id = 10020 aliases = kangaroorat, roorat source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6166,7 +6139,6 @@ taxonomy_id = 9371 aliases = echinopstelfairi, etelfairi, tenrec source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6186,7 +6158,6 @@ taxonomy_id = 9365 aliases = hedgehog source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6207,7 +6178,6 @@ taxonomy_id = 9796 aliases = horse source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6228,7 +6198,6 @@ taxonomy_id = 9685 aliases = cat, fcatus, feliscatus, moggy, tiddles source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6248,7 +6217,6 @@ taxonomy_id = 59894 aliases = flycatcher, falbicollis, falb source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6268,7 +6236,6 @@ taxonomy_id = 8049 aliases = cod,gmorhua,gadus_morhua,gmor,atlantic_cod,gadmor source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6290,7 +6257,6 @@ taxonomy_id = 9031 aliases = chick, chicken, gallusgallus, ggallus source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6312,7 +6278,6 @@ taxonomy_id = 69293 aliases = gaculeatus, gasterosteusaculeatus, stickleback source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6333,7 +6298,6 @@ taxonomy_id = 9595 aliases = gorilla source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6357,7 +6321,6 @@ source = DBASS3::homo_sapiens source = DBASS5::homo_sapiens source = EntrezGene::MULTI source = GO::homo_sapiens -source = goslim_goa::MULTI source = HPA::homo_sapiens source = InterproGO::MULTI source = HGNC::homo_sapiens @@ -6387,7 +6350,6 @@ taxonomy_id = 43179 aliases = squirrel, thirteen-lined ground squirrel, source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6424,7 +6386,6 @@ taxonomy_id = 7897 aliases = coelacanth, lchalumnae, living fossil, lamineria source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6444,7 +6405,6 @@ taxonomy_id = 7918 aliases = spotted gar source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6464,7 +6424,6 @@ taxonomy_id = 9785 aliases = elephant, lafricana, loxodontaafricana source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI @@ -6484,7 +6443,6 @@ taxonomy_id = 9544 aliases = macaque, rhesus, rhesus macaque, rmacaque source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6505,7 +6463,6 @@ taxonomy_id = 9315 aliases = wallaby, macropus, tammar wallaby, macropuseugenii source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6526,7 +6483,6 @@ taxonomy_id = 9103 aliases = turkey, common turkey, meleagris gallopavo, mgallopavo source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6547,7 +6503,6 @@ taxonomy_id = 30608 aliases = mouse lemur, mmur, mmurinus, mouse_lemur, microcebus murinus source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6568,7 +6523,6 @@ taxonomy_id = 13616 aliases = mdomestica, mono, monodelphis, monodelphisdomestica, opossum, possum source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6590,7 +6544,6 @@ aliases = mmusculus, mouse, musmusculus source = CCDS::mus_musculus source = EntrezGene::MULTI source = GO::mus_musculus -source = goslim_goa::MULTI source = InterproGO::MULTI #source = IMGT/GENE_DB::mus_musculus source = IKMCs_KOs::mus_musculus @@ -6620,7 +6573,6 @@ taxonomy_id = 9669 aliases = mputorius, ferret, mfuro source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6641,7 +6593,6 @@ taxonomy_id = 59463 aliases = little brown bat, microbat source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6662,7 +6613,6 @@ taxonomy_id = 9978 aliases = pika, American pika source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6693,7 +6643,6 @@ source = UniGene::oreochromis_niloticus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = UniParc::MULTI -source = goslim_goa::MULTI source = RFAM::MULTI source = miRBase::MULTI source = ArrayExpress::MULTI @@ -6703,7 +6652,6 @@ taxonomy_id = 9258 aliases = duckbilled_platypus, duckbilledplatypus, ornithorhynchusanatinus, platypus source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6727,7 +6675,6 @@ taxonomy_id = 9986 aliases = ocuniculus, oryctolaguscuniculus, rabbit source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6748,7 +6695,6 @@ taxonomy_id = 8090 aliases = japanese medaka, japanese ricefish, medaka source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6769,7 +6715,6 @@ taxonomy_id = 30611 aliases = bushbaby, ogarnetti, otolemur, otogar, galago source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6790,7 +6735,6 @@ taxonomy_id = 9940 aliases = sheep, ovisaries, domestic sheep, oar, ovis aries source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6811,7 +6755,6 @@ taxonomy_id = 9598 aliases = pantroglodytes, ptroglodytes, chimpanzee, chimp source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6832,7 +6775,6 @@ taxonomy_id = 9555 aliases = papio_anubis, panubis, panu, papanu source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6866,7 +6808,6 @@ taxonomy_id = 13735 aliases = psinensis, softshell turtle, chinese softshell turtle, chinese soft shell turtle, p_sinensis source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6886,7 +6827,6 @@ taxonomy_id = 7757 aliases = lamprey, sea lamprey, pmarinus source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6907,7 +6847,6 @@ taxonomy_id = 9755 aliases = PhyMac,physeter_macrocephalus,sperm whale,pmac,pmacrocephalus,physeter macrocephalus,phymac source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::MULTI-vertebrate_other @@ -6925,7 +6864,6 @@ taxonomy_id = 48698 aliases = poecilia_formosa, pfor, pformosa, poefor source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6945,7 +6883,6 @@ taxonomy_id = 9601 aliases = pongopygmaeus, pongo pygmaeus, ppygmaeus, orangutan, orang, pongo_abelii, pabelii source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6966,7 +6903,6 @@ taxonomy_id = 9813 aliases = rockhyrax, hyrax, procap source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -6986,7 +6922,6 @@ taxonomy_id = 132908 aliases = megabat, pvampyrus, largeflyingfox source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7006,7 +6941,6 @@ taxonomy_id = 10116 aliases = rat, rattusnorvegicus, rnorvegicus source = EntrezGene::MULTI source = GO::rattus_norvegicus -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7047,7 +6981,6 @@ taxonomy_id = 9305 aliases = devil, Sarcophilus_harrisii, sarcophilus_harrisii, tasmanian_devil, taz source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7083,7 +7016,6 @@ taxonomy_id = 42254 aliases = sorex_araneus, ground_shrew, sorex araneus, saraneus, shrew source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7241,7 +7173,6 @@ taxonomy_id = 59729 aliases = zebrafinch, zebra_finch, taeniopygiaguttata, tguttata, poephila_guttata, taenopygia_guttata, poephilaguttata, taenopygiaguttata source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7262,7 +7193,6 @@ taxonomy_id = 31033 aliases = frubripes, fugu, fugu_rubripes, fugurubripes, pufferfish source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7283,7 +7213,6 @@ taxonomy_id = 9478 aliases = tarsier, bonyfingers source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7303,7 +7232,6 @@ taxonomy_id = 99883 aliases = tetraodon, tnigroviridis, tnig, tetraodon_nigroviridis source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7328,7 +7256,6 @@ taxonomy_id = 37347 aliases = treeshrew source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7349,7 +7276,6 @@ taxonomy_id = 9739 aliases = dolphin, bottlenose_dolphi source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7369,7 +7295,6 @@ taxonomy_id = 30538 aliases = alpaca, lama_pacos source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7389,7 +7314,6 @@ taxonomy_id = 8364 aliases = pipid, pipidfrog, xenopus, xenopustropicalis, xtropicalis source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7413,7 +7337,6 @@ taxonomy_id = 8083 aliases = xiphophorus, xmaculatus, platyfish source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7628,7 +7551,6 @@ taxonomy_id = 61853 aliases = nomascus_leucogenys, gibbon, Gibbon source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI @@ -7652,7 +7574,6 @@ taxonomy_id = 9823 aliases = pig, sscrofa, susscr, sscr, sus scrofa source = EntrezGene::MULTI source = GO::MULTI -source = goslim_goa::MULTI source = InterproGO::MULTI source = Interpro::MULTI source = Reactome::MULTI -- GitLab