diff --git a/modules/t/test-genome-DBs/ontology/ontology/alt_id.sql b/modules/t/test-genome-DBs/ontology/ontology/alt_id.sql new file mode 100644 index 0000000000000000000000000000000000000000..428672c17187a1dcf48fe75c23637183798bfc1f --- /dev/null +++ b/modules/t/test-genome-DBs/ontology/ontology/alt_id.sql @@ -0,0 +1,11 @@ +SET @saved_cs_client = @@character_set_client; +SET character_set_client = utf8; +CREATE TABLE `alt_id` ( + `alt_id` int(10) unsigned NOT NULL AUTO_INCREMENT, + `term_id` int(10) unsigned NOT NULL, + `accession` varchar(64) NOT NULL, + PRIMARY KEY (`alt_id`), + UNIQUE KEY `term_alt_idx` (`term_id`,`alt_id`), + KEY `accession_idx` (`accession`(50)) +) ENGINE=MyISAM AUTO_INCREMENT=7 DEFAULT CHARSET=latin1; +SET character_set_client = @saved_cs_client; diff --git a/modules/t/test-genome-DBs/ontology/ontology/alt_id.txt b/modules/t/test-genome-DBs/ontology/ontology/alt_id.txt new file mode 100644 index 0000000000000000000000000000000000000000..4859b75c2d3c8f15f38055ce64e230ccf5a810fa --- /dev/null +++ b/modules/t/test-genome-DBs/ontology/ontology/alt_id.txt @@ -0,0 +1,6 @@ +1 2688 GO:0005554 +2 2702 GO:0003695 +3 2704 GO:0003698 +4 2704 GO:0003699 +5 2811 GO:0009387 +6 13423 GO:0032134 diff --git a/modules/t/test-genome-DBs/ontology/ontology/closure.txt b/modules/t/test-genome-DBs/ontology/ontology/closure.txt index 57be56504fd9226993a0c430082009a24b252564..98123d8bffc38c42e0a1994e5ef51913fe8988f3 100644 --- a/modules/t/test-genome-DBs/ontology/ontology/closure.txt +++ b/modules/t/test-genome-DBs/ontology/ontology/closure.txt @@ -1,153 +1,153 @@ -144 144 144 N 0 3 -166 166 166 N 0 3 -259 259 259 N 0 3 -304 304 304 N 0 3 -305 305 305 N 0 3 -306 306 306 N 0 3 -307 307 307 N 0 3 -308 308 308 N 0 3 -309 309 309 N 0 3 -310 310 310 N 0 3 -399 399 399 N 0 3 -614 614 614 N 0 3 -615 615 615 N 0 3 -616 616 616 N 0 3 -617 617 617 N 0 3 -618 618 618 N 0 3 -619 619 619 N 0 3 -623 623 623 N 0 3 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