diff --git a/misc-scripts/xref_mapping/XrefParser/curated_transcriptParser.pm b/misc-scripts/xref_mapping/XrefParser/curated_transcriptParser.pm index d5da63aeb2ca009d79e69841407ca213d3009bb4..59b965b42bc40501bf4b578e0c37072d4a2a9c7b 100644 --- a/misc-scripts/xref_mapping/XrefParser/curated_transcriptParser.pm +++ b/misc-scripts/xref_mapping/XrefParser/curated_transcriptParser.pm @@ -136,7 +136,7 @@ sub run_script { my $sql = 'select tsi.stable_id, x.display_label, t.status from analysis a, xref x, object_xref ox , transcript_stable_id tsi, external_db e, transcript t where t.analysis_id = a.analysis_id and a.logic_name like "%havana%" and e.external_db_id = x.external_db_id and x.xref_id = ox.xref_id and tsi.transcript_id = ox.ensembl_id and t.transcript_id = tsi.transcript_id and e.db_name like ?'; - my $sql_vega = 'select tsi.stable_id, x.display_label, t.status from xref x, object_xref ox , transcript_stable_id tsi, external_db e, transcript t where e.external_db_id = x.external_db_id and x.xref_id = ox.xref_id and tsi.transcript_id = ox.ensembl_id and t.transcript_id = tsi.transcript_id and e.db_name like ?'; + my $sql_vega = 'select tsi.stable_id, x.display_label, t.status from xref x, object_xref ox , transcript_stable_id tsi, external_db e, transcript t where e.external_db_id = x.external_db_id and x.xref_id = ox.xref_id and tsi.transcript_id = ox.ensembl_id and t.transcript_id = tsi.transcript_id and tsi.stable_id <> x.display_label and e.db_name like ?'; my %ott_to_vega_name;