diff --git a/misc-scripts/external_db/external_dbs.txt b/misc-scripts/external_db/external_dbs.txt index 5e392e19b47242f345df30193616cb9a605a006d..5a9f730046cbabd5b52b89b83c62c6a85439728f 100644 --- a/misc-scripts/external_db/external_dbs.txt +++ b/misc-scripts/external_db/external_dbs.txt @@ -3,181 +3,182 @@ # Please separate fields in this file with TABS not spaces! # # -210 Anopheles_symbol 1 KNOWN 1 0 50 Anopheles symbol -300 BRIGGSAE_HYBRID 1 KNOWNXREF 1 0 5 Briggsae Hybrid -400 Celera_Gene 1 PRED 1 0 5 Celera gene -410 Celera_Pep 1 PRED 1 0 5 Celera peptide -420 Celera_Trans 1 PRED 1 0 5 Celera transcript -600 DROS_ORTH 1 ORTH 1 0 5 DROS ORTH -700 EMBL 1 KNOWNXREF 1 0 5 EMBL -701 EMBL_predicted 1 PRED 1 0 4 Predicted EMBL -800 flybase_gene_id 1 KNOWNXREF 1 0 5 Flybase Gene -801 flybase_translation_id 1 KNOWNXREF 1 0 5 Flybase translation ID -802 flybase_gff 1 KNOWNXREF 1 0 5 Flybase GFF -803 flybase_polypeptide_id 1 KNOWNXREF 1 0 5 Flybase Polypeptide ID -804 flybase_annotation_id 1 KNOWNXREF 1 0 5 Flybase Annotation ID -805 flybase_symbol 1 KNOWNXREF 1 0 50 Flybase Symbol -806 flybase_synonym 1 KNOWNXREF 1 0 5 Flybase Synonym -807 flybase_name 1 KNOWNXREF 1 0 5 Flybase Name -808 flybase_transcript_id 1 KNOWNXREF 1 0 5 Flybase transcript ID -810 gadfly_gene_cgid 1 XREF 1 0 10 Gadfly gene CGID -811 gadfly_transcript_cgid 1 XREF 1 0 10 Gadfly transcript CGID -812 gadfly_translation_cgid 1 XREF 1 0 10 Gadfly translation CGID -821 FlyBaseName_gene 1 XREF 1 0 5 FlyBaseName gene -824 FlyBaseName_translations 1 XREF 1 0 5 FlyBaseName translations -825 FlyBaseName_transcript 1 XREF 1 0 50 FlyBaseName transcript -826 FlyBaseCGID_gene 1 XREF 1 0 5 FlyBaseCGID gene -827 FlyBaseCGID_transcript 1 XREF 1 0 50 FlyBaseCGID transcript -900 GKB 1 XREF 1 0 5 GKB -1000 GO 1 KNOWNXREF 1 0 5 GO -1100 HUGO 1 KNOWNXREF 0 1 100 HGNC Symbol -1200 Interpro 1 XREF 1 0 5 Interpro -1300 EntrezGene 1 KNOWNXREF 1 0 10 EntrezGene -1400 MarkerSymbol 1 KNOWNXREF 1 1 50 MGI Symbol -1500 MIM 1 KNOWNXREF 1 0 5 MIM -1510 MIM_GENE 1 KNOWNXREF 1 0 5 MIM gene -1520 MIM_MORBID 1 KNOWNXREF 1 0 5 MIM disease -1600 PDB 1 KNOWNXREF 1 0 5 PDB -1700 protein_id 1 KNOWNXREF 1 0 5 Protein ID -1701 protein_id_predicted 1 PRED 1 0 4 Predicted Protein ID -1800 RefSeq_dna 1 KNOWN 1 0 25 RefSeq DNA -1805 RefSeq_dna_predicted 1 PRED 1 0 15 RefSeq DNA predicted -1810 RefSeq_peptide 1 KNOWN 1 0 26 RefSeq peptide -1815 RefSeq_peptide_predicted 1 PRED 1 0 16 RefSeq peptide predicted -1900 Sanger_Hver1_2_1 1 XREF 1 0 5 Sanger Hver 121 -1901 Sanger_Hver1_3_1 1 XREF 1 0 5 Sanger Hver 131 -1902 SNGR_Hver 1 XREF 1 0 5 Sanger Hver -1910 Sanger_Mver1_1_1 1 XREF 1 0 5 Sanger Hver 111 -2000 Uniprot/SPTREMBL 1 KNOWN 1 0 20 UniProtKB/TrEMBL -2001 Uniprot/SPTREMBL_predicted 1 PRED 1 0 15 Predicted UniProtKB/TrEMBL -2010 prediction_SPTREMBL 1 XREF 1 1 10 Prediction UniProtKB/TrEMBL -2100 Superfamily 1 KNOWNXREF 1 0 5 Superfamily -2200 Uniprot/SWISSPROT 1 KNOWN 1 1 30 UniProtKB/Swiss-Prot -2201 Uniprot/SWISSPROT_predicted 1 PRED 1 1 15 Predicted UniProtKB/Swiss-Prot -2202 Uniprot/Varsplic 1 KNOWN 1 1 15 UniprotKB/SpliceVariant -2300 Vega_gene 1 XREF 1 0 5 Vega gene -2310 Vega_transcript 1 XREF 1 0 5 Vega transcript -2320 Vega_translation 1 XREF 1 0 5 Vega translation -2400 wormbase_gene 1 KNOWN 1 0 5 Wormbase Gene -2410 wormbase_transcript 1 KNOWN 1 0 5 Wormbase Transcript -2420 wormpep_id 1 KNOWN 1 0 5 Wormpep ID -2430 wormbase_pseudogene 1 PSEUDO 1 0 5 Wormbase Pseudogene -2440 wormbase_locus 1 KNOWN 1 0 5 Wormbase Locus -2510 ZFIN_ID 1 KNOWNXREF 1 1 5 ZFIN -2530 ZFIN_xpat 1 KNOWNXREF 1 0 4 ZFIN expression patterns -2600 GeneDB 1 KNOWN 1 0 5 GeneDB -2601 cint_jgi_v1 1 KNOWN 1 0 10 JGI Gene ID (JGI 1.0) -2602 cint_jgi_v2 1 KNOWN 1 0 5 JGI Gene ID (JGI 2.0) -2610 cint_aniseed_v1 1 KNOWN 1 0 5 ANISEED (JGI 1.0) -2611 cint_aniseed_v2 1 KNOWN 1 0 5 ANISEED (JGI 2.0) -2700 Ens_Hs_gene 1 XREF 1 0 5 Ensembl Human Gene -2710 Ens_Hs_transcript 1 XREF 1 0 5 Ensembl Human Transcript -2720 Ens_Hs_translation 1 XREF 1 0 5 Ensembl Human Translation -2800 RGD 1 KNOWNXREF 1 0 50 RGD Symbol -2900 Genoscope_pred_gene 1 XREF 1 0 38 Genoscope pred gene -2910 Genoscope_pred_transcript 1 XREF 1 0 39 Genoscope pred transcript -2920 Genoscope_annotated_gene 1 KNOWN 1 0 40 Genoscope annotated gene -3001 AFFY_MG_U74_all 1 XREF 1 0 1 Affymx Microarray U74 -3002 AFFY_MG_U74A 1 XREF 1 0 1 Affymx Microarray U74 -3003 AFFY_MG_U74Av2 1 XREF 1 0 1 Affymx Microarray U74 -3004 AFFY_MG_U74B 1 XREF 1 0 1 Affymx Microarray U74 -3005 AFFY_MG_U74Bv2 1 XREF 1 0 1 Affymx Microarray U74 -3006 AFFY_MG_U74C 1 XREF 1 0 1 Affymx Microarray U74 -3007 AFFY_MG_U74Cv2 1 XREF 1 0 1 Affymx Microarray U74 -3008 AFFY_MOE430_all 1 XREF 1 0 1 Affymx Microarray OE430 -3009 AFFY_MOE430A 1 XREF 1 0 1 Affymx Microarray MOE430 -3010 AFFY_MOE430B 1 XREF 1 0 1 Affymx Microarray MOE430 -3011 AFFY_Mu11Ksub_all 1 XREF 1 0 1 Affymx Microarray Mu11 -3012 AFFY_Mu11KsubA 1 XREF 1 0 1 Affymx Microarray Mu11 -3013 AFFY_Mu11KsubB 1 XREF 1 0 1 Affymx Microarray Mu11 -3014 AFFY_Mouse430_2 1 XREF 1 0 1 Affymx Microarray Mouse430 -3015 AFFY_Mouse430A_2 1 XREF 1 0 1 Affymx Microarray Mouse430 -3051 AFFY_RAE230_all 1 XREF 1 0 1 Affymx Microarray RAE230 -3052 AFFY_RAE230A 1 XREF 1 0 1 Affymx Microarray RAE230 -3053 AFFY_RAE230B 1 XREF 1 0 1 Affymx Microarray RAE230 -3054 AFFY_RG_U34_all 1 XREF 1 0 1 Affymx Microarray U34 -3055 AFFY_RG_U34A 1 XREF 1 0 1 Affymx Microarray U34 -3056 AFFY_RG_U34B 1 XREF 1 0 1 Affymx Microarray U34 -3057 AFFY_RG_U34C 1 XREF 1 0 1 Affymx Microarray U34 -3058 AFFY_RN_U34 1 XREF 1 0 1 Affymx Microarray U34 -3059 AFFY_RT_U34 1 XREF 1 0 1 Affymx Microarray U34 -3101 AFFY_HG_U133_all 1 XREF 1 0 1 Affymx Microarray U133 -3102 AFFY_HG_U133A 1 XREF 1 0 1 Affymx Microarray U133 -3103 AFFY_HG_U133B 1 XREF 1 0 1 Affymx Microarray U133 -3104 AFFY_HG_U95_all 1 XREF 1 0 1 Affymx Microarray U95 -3105 AFFY_HG_U95A 1 XREF 1 0 1 Affymx Microarray U95 -3106 AFFY_HG_U95Av2 1 XREF 1 0 1 Affymx Microarray U95 -3107 AFFY_HG_U95B 1 XREF 1 0 1 Affymx Microarray U95 -3108 AFFY_HG_U95C 1 XREF 1 0 1 Affymx Microarray U95 -3109 AFFY_HG_U95D 1 XREF 1 0 1 Affymx Microarray U95 -3110 AFFY_HG_U95E 1 XREF 1 0 1 Affymx Microarray U95 -3111 AFFY_HG_U133_Plus_2 1 XREF 1 0 1 Affymx Microarray U133 -3112 AFFY_HG_U133A_2 1 XREF 1 0 1 Affymx Microarray U133 -3113 AFFY_HG_Focus 1 XREF 1 0 1 Affymx Microarray Focus -3114 AFFY_Rat230_2 1 XREF 1 0 1 Affymx Microarray Rat230 -3115 AFFY_Zebrafish 1 XREF 1 0 1 Affymx Microarray Zebrafish -3116 AFFY_U133_X3P 1 XREF 1 0 1 Affymx Microarray U133 -3117 AFFY_Canine 1 XREF 1 0 1 Affymx Microarray Canine -3118 AFFY_Chicken 1 XREF 1 0 1 Affymx Microarray Chicken -3119 AFFY_HuGeneFL 1 XREF 1 0 1 Affymx Microarray HuGeneFL -3120 AFFY_DrosGenome1 1 XREF 1 0 1 Affymx Microarray Drosophila -3121 AFFY_Drosophila_2 1 XREF 1 0 1 Affymx Microarray Drosophila2.0 -3122 AFFY_HC_G110 1 XREF 1 0 1 Affymx Microarray HCG110 -3123 AFFY_C_elegans 1 XREF 1 0 1 Affymx Microarray C Elegans -3124 AFFY_Plasmodium_Anopheles 1 XREF 1 0 1 Affymx Microarray Anopheles -3125 AFFY_Bovine 1 XREF 1 0 1 Affymx Microarray Bovine -3127 AFFY_YG_S98 1 XREF 1 0 1 Affymx Microarray YG-S98 -3128 AFFY_Yeast_2 1 XREF 1 0 1 Affymx Microarray Yeast_2 -3129 AFFY_Rhesus 1 XREF 1 0 1 Affymx Microarray R Macaque -3130 AFFY_CINT06a520380F 1 XREF 1 0 1 Affymx Microarray C Intestinalis CINT06a520380F -3200 VB_array 1 XREF 1 0 1 VectorBase Array -3201 ARRAY_EMBL_MMC1_20k_v1 1 XREF 1 0 1 VectorBase Array -3202 ARRAY_EMBL_MMC2_12k_v1 1 XREF 1 0 1 VectorBase Array -3203 ARRAY_JHU_GAM3_0_21k_v1 1 XREF 1 0 1 VectorBase Array -3204 ARRAY_LIV_GAMDETOX_0_25k_v1 1 XREF 1 0 1 VectorBase Array -3205 ARRAY_JHU_AEG1_0_20k_v1 1 XREF 1 0 1 VectorBase Array -3206 ARRAY_LIV_AEGDETOX_0_25k_v1 1 XREF 1 0 1 VectorBase Array -3207 ARRAY_ND_TIGRTC_9_6K_v1 1 XREF 1 0 1 VectorBase Array -3208 ARRAY_UCR_GillMgMT_0_2K_v2 1 XREF 1 0 1 VectorBase Array -3250 Illumina 1 XREF 1 0 1 Illumina -3251 AGILENT_G2518A 1 XREF 1 0 1 Agilent Microarray G2518A -3255 Illumina_V1 1 XREF 1 0 1 Illumina V1 -3256 Illumina_V2 1 XREF 1 0 1 Illumina V2 -3300 miRBase 1 KNOWNXREF 1 0 1 miRBase -3310 miRBase_predicted 1 XREF 1 0 1 miRBase predicted -3400 SGD 1 KNOWN 1 0 50 SGD -3500 IPI 1 KNOWN 1 0 5 IPI -3800 CCDS 1 KNOWN 1 0 50 CCDS -3900 PUBMED 1 KNOWN 1 0 5 Sequence Publications -4000 MEDLINE 1 KNOWN 1 0 5 MEDLINE -4100 UniGene 1 KNOWN 1 0 5 UniGene -4200 RFAM 1 XREF 1 0 5 RFAM -4300 AgilentProbe 1 XREF 1 0 5 Agilent Probe -4305 AgilentCGH 1 XREF 1 0 5 Agilent CGH -4400 Xenopus_Jamboree 1 KNOWN 1 0 1 Jamboree -4500 Tiffin 1 XREF 1 0 1 Tiffin DNA motifs -4600 OTTT 1 XREF 1 0 1 Havana transcripts -4650 shares_CDS_with 1 XREF 1 0 1 transcript having same CDS -4700 Medaka 1 XREF 1 0 1 Medaka Genome Project -4800 ENST 1 XREF 1 0 1 Ensembl transcripts -4900 TCAG 1 XREF 1 0 75 TCAG Chr 7 Annotation -5000 Ens_Mm_gene 1 XREF 1 0 40 Ensembl Mouse Gene -5020 Ens_Mm_translation 1 XREF 1 0 40 Ensembl Mouse Translation -5100 IMGT 1 XREF 1 0 7 IMGT/HLA -6000 Codelink 1 XREF 1 0 1 GE Healthcare/Amersham Codelink WGA -5200 Oxford_FGU_Md_gene 1 PRED 1 0 1 Oxford Ponting Group Monodelphis predictions gene id -5300 Oxford_FGU_Md_tscript 1 PRED 1 0 1 Oxford Ponting Group Monodelphis predictions transcript id -5400 Oxford_FGU_Oa_gene 1 PRED 1 0 1 Oxford Ponting Group Platypus predictions gene id -5500 Oxford_FGU_Oa_tscript 1 PRED 1 0 1 Oxford Ponting Group Platypus predictions transcript id -5700 Ens_Cf_gene 1 XREF 1 0 5 Ensembl Dog Gene -5710 Ens_Cf_transcript 1 XREF 1 0 5 Ensembl Dog Transcript -5720 Ens_Cf_translation 1 XREF 1 0 5 Ensembl Dog Translation -6100 Havana_gene 1 XREF 1 0 100 Havana gene ID -7159 AedesGenBank 1 PRED 1 0 30 Aedes GenBank -7200 IMGT/LIGM_DB 200641-6 XREF 1 1 10 IMGT/LIGM-DB -7201 IMGT/GENE_DB 200641-6 KNOWN 1 0 40 IMGT/GENE-DB +210 Anopheles_symbol 1 KNOWN 1 0 50 Anopheles symbol MISC +300 BRIGGSAE_HYBRID 1 KNOWNXREF 1 0 5 Briggsae Hybrid MISC +400 Celera_Gene 1 PRED 1 0 5 Celera gene MISC +410 Celera_Pep 1 PRED 1 0 5 Celera peptide MISC +420 Celera_Trans 1 PRED 1 0 5 Celera transcript MISC +600 DROS_ORTH 1 ORTH 1 0 5 DROS ORTH MISC +700 EMBL 1 KNOWNXREF 1 0 5 EMBL MISC +701 EMBL_predicted 1 PRED 1 0 4 Predicted EMBL MISC +800 flybase_gene_id 1 KNOWNXREF 1 0 5 Flybase Gene MISC +801 flybase_translation_id 1 KNOWNXREF 1 0 5 Flybase translation ID MISC +802 flybase_gff 1 KNOWNXREF 1 0 5 Flybase GFF MISC +803 flybase_polypeptide_id 1 KNOWNXREF 1 0 5 Flybase Polypeptide ID MISC +804 flybase_annotation_id 1 KNOWNXREF 1 0 5 Flybase Annotation ID MISC +805 flybase_symbol 1 KNOWNXREF 1 0 50 Flybase Symbol MISC +806 flybase_synonym 1 KNOWNXREF 1 0 5 Flybase Synonym MISC +807 flybase_name 1 KNOWNXREF 1 0 5 Flybase Name MISC +808 flybase_transcript_id 1 KNOWNXREF 1 0 5 Flybase transcript ID MISC +810 gadfly_gene_cgid 1 XREF 1 0 10 Gadfly gene CGID MISC +811 gadfly_transcript_cgid 1 XREF 1 0 10 Gadfly transcript CGID MISC +812 gadfly_translation_cgid 1 XREF 1 0 10 Gadfly translation CGID MISC +821 FlyBaseName_gene 1 XREF 1 0 5 FlyBaseName gene MISC +824 FlyBaseName_translations 1 XREF 1 0 5 FlyBaseName translations MISC +825 FlyBaseName_transcript 1 XREF 1 0 50 FlyBaseName transcript MISC +826 FlyBaseCGID_gene 1 XREF 1 0 5 FlyBaseCGID gene MISC +827 FlyBaseCGID_transcript 1 XREF 1 0 50 FlyBaseCGID transcript MISC +900 GKB 1 XREF 1 0 5 GKB MISC +1000 GO 1 KNOWNXREF 1 0 5 GO MISC +1100 HUGO 1 KNOWNXREF 0 1 100 HGNC Symbol MISC +1200 Interpro 1 XREF 1 0 5 Interpro MISC +1300 EntrezGene 1 KNOWNXREF 1 0 10 EntrezGene MISC +1400 MarkerSymbol 1 KNOWNXREF 1 1 50 MGI Symbol MISC +1500 MIM 1 KNOWNXREF 1 0 5 MIM MISC +1510 MIM_GENE 1 KNOWNXREF 1 0 5 MIM gene MISC +1520 MIM_MORBID 1 KNOWNXREF 1 0 5 MIM disease MISC +1600 PDB 1 KNOWNXREF 1 0 5 PDB MISC +1700 protein_id 1 KNOWNXREF 1 0 5 Protein ID MISC +1701 protein_id_predicted 1 PRED 1 0 4 Predicted Protein ID MISC +1800 RefSeq_dna 1 KNOWN 1 0 25 RefSeq DNA MISC +1805 RefSeq_dna_predicted 1 PRED 1 0 15 RefSeq DNA predicted MISC +1810 RefSeq_peptide 1 KNOWN 1 0 26 RefSeq peptide MISC +1815 RefSeq_peptide_predicted 1 PRED 1 0 16 RefSeq peptide predicted MISC +1900 Sanger_Hver1_2_1 1 XREF 1 0 5 Sanger Hver 121 MISC +1901 Sanger_Hver1_3_1 1 XREF 1 0 5 Sanger Hver 131 MISC +1902 SNGR_Hver 1 XREF 1 0 5 Sanger Hver MISC +1910 Sanger_Mver1_1_1 1 XREF 1 0 5 Sanger Hver 111 MISC +2000 Uniprot/SPTREMBL 1 KNOWN 1 0 20 UniProtKB/TrEMBL MISC +2001 Uniprot/SPTREMBL_predicted 1 PRED 1 0 15 Predicted UniProtKB/TrEMBL MISC +2010 prediction_SPTREMBL 1 XREF 1 1 10 Prediction UniProtKB/TrEMBL MISC +2100 Superfamily 1 KNOWNXREF 1 0 5 Superfamily MISC +2200 Uniprot/SWISSPROT 1 KNOWN 1 1 30 UniProtKB/Swiss-Prot MISC +2201 Uniprot/SWISSPROT_predicted 1 PRED 1 1 15 Predicted UniProtKB/Swiss-Prot MISC +2202 Uniprot/Varsplic 1 KNOWN 1 1 15 UniprotKB/SpliceVariant MISC +2300 Vega_gene 1 XREF 1 0 5 Vega gene MISC +2310 Vega_transcript 1 XREF 1 0 5 Vega transcript MISC +2320 Vega_translation 1 XREF 1 0 5 Vega translation MISC +2400 wormbase_gene 1 KNOWN 1 0 5 Wormbase Gene MISC +2410 wormbase_transcript 1 KNOWN 1 0 5 Wormbase Transcript MISC +2420 wormpep_id 1 KNOWN 1 0 5 Wormpep ID MISC +2430 wormbase_pseudogene 1 PSEUDO 1 0 5 Wormbase Pseudogene MISC +2440 wormbase_locus 1 KNOWN 1 0 5 Wormbase Locus MISC +2510 ZFIN_ID 1 KNOWNXREF 1 1 5 ZFIN PRIMARY_DB_SYN +2530 ZFIN_xpat 1 KNOWNXREF 1 0 4 ZFIN expression patterns MISC +2600 GeneDB 1 KNOWN 1 0 5 GeneDB MISC +2601 cint_jgi_v1 1 KNOWN 1 0 10 JGI Gene ID (JGI 1.0) MISC +2602 cint_jgi_v2 1 KNOWN 1 0 5 JGI Gene ID (JGI 2.0) MISC +2610 cint_aniseed_v1 1 KNOWN 1 0 5 ANISEED (JGI 1.0) MISC +2611 cint_aniseed_v2 1 KNOWN 1 0 5 ANISEED (JGI 2.0) MISC +2700 Ens_Hs_gene 1 XREF 1 0 5 Ensembl Human Gene MISC +2710 Ens_Hs_transcript 1 XREF 1 0 5 Ensembl Human Transcript MISC +2720 Ens_Hs_translation 1 XREF 1 0 5 Ensembl Human Translation MISC +2800 RGD 1 KNOWNXREF 1 0 50 RGD Symbol MISC +2900 Genoscope_pred_gene 1 XREF 1 0 38 Genoscope pred gene MISC +2910 Genoscope_pred_transcript 1 XREF 1 0 39 Genoscope pred transcript MISC +2920 Genoscope_annotated_gene 1 KNOWN 1 0 40 Genoscope annotated gene MISC +3001 AFFY_MG_U74_all 1 XREF 1 0 1 Affymx Microarray U74 ARRAY +3002 AFFY_MG_U74A 1 XREF 1 0 1 Affymx Microarray U74 ARRAY +3003 AFFY_MG_U74Av2 1 XREF 1 0 1 Affymx Microarray U74 ARRAY +3004 AFFY_MG_U74B 1 XREF 1 0 1 Affymx Microarray U74 ARRAY +3005 AFFY_MG_U74Bv2 1 XREF 1 0 1 Affymx Microarray U74 ARRAY +3006 AFFY_MG_U74C 1 XREF 1 0 1 Affymx Microarray U74 ARRAY +3007 AFFY_MG_U74Cv2 1 XREF 1 0 1 Affymx Microarray U74 ARRAY +3008 AFFY_MOE430_all 1 XREF 1 0 1 Affymx Microarray OE430 ARRAY +3009 AFFY_MOE430A 1 XREF 1 0 1 Affymx Microarray MOE430 ARRAY +3010 AFFY_MOE430B 1 XREF 1 0 1 Affymx Microarray MOE430 ARRAY +3011 AFFY_Mu11Ksub_all 1 XREF 1 0 1 Affymx Microarray Mu11 ARRAY +3012 AFFY_Mu11KsubA 1 XREF 1 0 1 Affymx Microarray Mu11 ARRAY +3013 AFFY_Mu11KsubB 1 XREF 1 0 1 Affymx Microarray Mu11 ARRAY +3014 AFFY_Mouse430_2 1 XREF 1 0 1 Affymx Microarray Mouse430 ARRAY +3015 AFFY_Mouse430A_2 1 XREF 1 0 1 Affymx Microarray Mouse430 ARRAY +3051 AFFY_RAE230_all 1 XREF 1 0 1 Affymx Microarray RAE230 ARRAY +3052 AFFY_RAE230A 1 XREF 1 0 1 Affymx Microarray RAE230 ARRAY +3053 AFFY_RAE230B 1 XREF 1 0 1 Affymx Microarray RAE230 ARRAY +3054 AFFY_RG_U34_all 1 XREF 1 0 1 Affymx Microarray U34 ARRAY +3055 AFFY_RG_U34A 1 XREF 1 0 1 Affymx Microarray U34 ARRAY +3056 AFFY_RG_U34B 1 XREF 1 0 1 Affymx Microarray U34 ARRAY +3057 AFFY_RG_U34C 1 XREF 1 0 1 Affymx Microarray U34 ARRAY +3058 AFFY_RN_U34 1 XREF 1 0 1 Affymx Microarray U34 ARRAY +3059 AFFY_RT_U34 1 XREF 1 0 1 Affymx Microarray U34 ARRAY +3101 AFFY_HG_U133_all 1 XREF 1 0 1 Affymx Microarray U133 ARRAY +3102 AFFY_HG_U133A 1 XREF 1 0 1 Affymx Microarray U133 ARRAY +3103 AFFY_HG_U133B 1 XREF 1 0 1 Affymx Microarray U133 ARRAY +3104 AFFY_HG_U95_all 1 XREF 1 0 1 Affymx Microarray U95 ARRAY +3105 AFFY_HG_U95A 1 XREF 1 0 1 Affymx Microarray U95 ARRAY +3106 AFFY_HG_U95Av2 1 XREF 1 0 1 Affymx Microarray U95 ARRAY +3107 AFFY_HG_U95B 1 XREF 1 0 1 Affymx Microarray U95 ARRAY +3108 AFFY_HG_U95C 1 XREF 1 0 1 Affymx Microarray U95 ARRAY +3109 AFFY_HG_U95D 1 XREF 1 0 1 Affymx Microarray U95 ARRAY +3110 AFFY_HG_U95E 1 XREF 1 0 1 Affymx Microarray U95 ARRAY +3111 AFFY_HG_U133_Plus_2 1 XREF 1 0 1 Affymx Microarray U133 ARRAY +3112 AFFY_HG_U133A_2 1 XREF 1 0 1 Affymx Microarray U133 ARRAY +3113 AFFY_HG_Focus 1 XREF 1 0 1 Affymx Microarray Focus ARRAY +3114 AFFY_Rat230_2 1 XREF 1 0 1 Affymx Microarray Rat230 ARRAY +3115 AFFY_Zebrafish 1 XREF 1 0 1 Affymx Microarray Zebrafish ARRAY +3116 AFFY_U133_X3P 1 XREF 1 0 1 Affymx Microarray U133 ARRAY +3117 AFFY_Canine 1 XREF 1 0 1 Affymx Microarray Canine ARRAY +3118 AFFY_Chicken 1 XREF 1 0 1 Affymx Microarray Chicken ARRAY +3119 AFFY_HuGeneFL 1 XREF 1 0 1 Affymx Microarray HuGeneFL ARRAY +3120 AFFY_DrosGenome1 1 XREF 1 0 1 Affymx Microarray Drosophila ARRAY +3121 AFFY_Drosophila_2 1 XREF 1 0 1 Affymx Microarray Drosophila2.0 ARRAY +3122 AFFY_HC_G110 1 XREF 1 0 1 Affymx Microarray HCG110 ARRAY +3123 AFFY_C_elegans 1 XREF 1 0 1 Affymx Microarray C Elegans ARRAY +3124 AFFY_Plasmodium_Anopheles 1 XREF 1 0 1 Affymx Microarray Anopheles ARRAY +3125 AFFY_Bovine 1 XREF 1 0 1 Affymx Microarray Bovine ARRAY +3127 AFFY_YG_S98 1 XREF 1 0 1 Affymx Microarray YG-S98 ARRAY +3128 AFFY_Yeast_2 1 XREF 1 0 1 Affymx Microarray Yeast_2 ARRAY +3129 AFFY_Rhesus 1 XREF 1 0 1 Affymx Microarray R Macaque ARRAY +3130 AFFY_CINT06a520380F 1 XREF 1 0 1 Affymx Microarray C Intestinalis CINT06a520380F ARRAY +3200 VB_array 1 XREF 1 0 1 VectorBase Array ARRAY +3201 ARRAY_EMBL_MMC1_20k_v1 1 XREF 1 0 1 VectorBase Array ARRAY +3202 ARRAY_EMBL_MMC2_12k_v1 1 XREF 1 0 1 VectorBase Array ARRAY +3203 ARRAY_JHU_GAM3_0_21k_v1 1 XREF 1 0 1 VectorBase Array ARRAY +3204 ARRAY_LIV_GAMDETOX_0_25k_v1 1 XREF 1 0 1 VectorBase Array ARRAY +3205 ARRAY_JHU_AEG1_0_20k_v1 1 XREF 1 0 1 VectorBase Array ARRAY +3206 ARRAY_LIV_AEGDETOX_0_25k_v1 1 XREF 1 0 1 VectorBase Array ARRAY +3207 ARRAY_ND_TIGRTC_9_6K_v1 1 XREF 1 0 1 VectorBase Array ARRAY +3208 ARRAY_UCR_GillMgMT_0_2K_v2 1 XREF 1 0 1 VectorBase Array ARRAY +3250 Illumina 1 XREF 1 0 1 Illumina ARRAY +3251 AGILENT_G2518A 1 XREF 1 0 1 Agilent Microarray G2518A ARRAY +3255 Illumina_V1 1 XREF 1 0 1 Illumina V1 ARRAY +3256 Illumina_V2 1 XREF 1 0 1 Illumina V2 ARRAY +3300 miRBase 1 KNOWNXREF 1 0 1 miRBase MISC +3310 miRBase_predicted 1 XREF 1 0 1 miRBase predicted MISC +3400 SGD 1 KNOWN 1 0 50 SGD MISC +3500 IPI 1 KNOWN 1 0 5 IPI MISC +3800 CCDS 1 KNOWN 1 0 50 CCDS MISC +3900 PUBMED 1 KNOWN 1 0 5 Sequence Publications LIT +4000 MEDLINE 1 KNOWN 1 0 5 MEDLINE LIT +4100 UniGene 1 KNOWN 1 0 5 UniGene MISC +4200 RFAM 1 XREF 1 0 5 RFAM MISC +4300 AgilentProbe 1 XREF 1 0 5 Agilent Probe ARRAY +4305 AgilentCGH 1 XREF 1 0 5 Agilent CGH ARRAY +4400 Xenopus_Jamboree 1 KNOWN 1 0 1 Jamboree MISC +4500 Tiffin 1 XREF 1 0 1 Tiffin DNA motifs MISC +4600 OTTT 1 XREF 1 0 1 Havana transcripts ALT_TRANS +4650 shares_CDS_with 1 XREF 1 0 1 transcript having same CDS ALT_TRANS +4700 Medaka 1 XREF 1 0 1 Medaka Genome Project MISC +4800 ENST 1 XREF 1 0 1 Ensembl transcripts MISC +4900 TCAG 1 XREF 1 0 75 TCAG Chr 7 Annotation MISC +5000 Ens_Mm_gene 1 XREF 1 0 40 Ensembl Mouse Gene MISC +5020 Ens_Mm_translation 1 XREF 1 0 40 Ensembl Mouse Translation MISC +5100 IMGT 1 XREF 1 0 7 IMGT/HLA MISC +6000 Codelink 1 XREF 1 0 1 GE Healthcare/Amersham Codelink WGA MISC +5200 Oxford_FGU_Md_gene 1 PRED 1 0 1 Oxford Ponting Group Monodelphis predictions gene id ALT_TRANS +5300 Oxford_FGU_Md_tscript 1 PRED 1 0 1 Oxford Ponting Group Monodelphis predictions transcript id ALT_TRANS +5400 Oxford_FGU_Oa_gene 1 PRED 1 0 1 Oxford Ponting Group Platypus predictions gene id ALT_TRANS +5500 Oxford_FGU_Oa_tscript 1 PRED 1 0 1 Oxford Ponting Group Platypus predictions transcript id ALT_TRANS +5700 Ens_Cf_gene 1 XREF 1 0 5 Ensembl Dog Gene MISC +5710 Ens_Cf_transcript 1 XREF 1 0 5 Ensembl Dog Transcript MISC +5720 Ens_Cf_translation 1 XREF 1 0 5 Ensembl Dog Translation MISC +6100 Havana_gene 1 XREF 1 0 100 Havana gene ID MISC +7159 AedesGenBank 1 PRED 1 0 30 Aedes GenBank MISC +7200 IMGT/LIGM_DB 200641-6 XREF 1 1 10 IMGT/LIGM-DB MISC +7201 IMGT/GENE_DB 200641-6 KNOWN 1 0 40 IMGT/GENE-DB MISC # # # Please separate fields in this file with TABS not spaces! # # + \ No newline at end of file