From a1833b48a01a1ff8a5e8a19366b8353a50ba602f Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Thu, 9 Dec 2004 16:33:19 +0000
Subject: [PATCH] more peptide name changes typer fixes
---
misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm | 2 +-
misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateBasic.pm | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm b/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
index 05021ac0ed..357f2ef0b9 100644
--- a/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
@@ -825,7 +825,7 @@ sub get_ensembl_object_type {
$type = "Transcript";
- } elsif ($filename =~ /_prot_/i) {
+ } elsif ($filename =~ /_peptide_/i) {
$type = "Translation";
diff --git a/misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateBasic.pm b/misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateBasic.pm
index b2e5d70251..f7b68f4f88 100644
--- a/misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateBasic.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateBasic.pm
@@ -90,7 +90,7 @@ sub submit_exonerate {
my $prefix = $root_dir . "/" . basename($query);
$prefix =~ s/\.\w+$//;
- my ($ensembl_type) = $prefix =~ /.*_(dna|prot)$/; # dna or prot
+ my ($ensembl_type) = $prefix =~ /.*_(dna|peptide)$/; # dna or prot
my $output = $self->get_class_name() . "_" . $ensembl_type . "_" . "\$LSB_JOBINDEX.map";
--
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