diff --git a/misc-scripts/alt_alleles/alt_alleles.pl b/misc-scripts/alt_alleles/alt_alleles.pl index c171ad757a52b8e01231711209e87f00097e8e2d..747e1a611b562d4ed6aed073c307b36ca40948da 100644 --- a/misc-scripts/alt_alleles/alt_alleles.pl +++ b/misc-scripts/alt_alleles/alt_alleles.pl @@ -90,9 +90,7 @@ print "\nFetched ".(scalar(keys %vega_to_ensembl_core_gene_id))." Vega Stable ID # Get AltAlleles from vega # my $vega_aaga = $vega_dba->get_AltAlleleGroupAdaptor(); -#TODO deprecated call in 74 -my $vega_groups = $vega_aaga->fetch_all_Groups(); -# my $groups = $vega_aaga->fetch_all(); #replace the above with me ASAP +my $vega_groups = $vega_aaga->fetch_all(); my $cnt_vega_rows = @{$vega_groups}; print STDERR "Fetched $cnt_vega_rows rows from the vega db alt_allele table\n";