From a51dae450dfa0a0a39ba383468c9a421fa240797 Mon Sep 17 00:00:00 2001
From: Andrew Yates <ayates@ebi.ac.uk>
Date: Fri, 27 Sep 2013 15:26:46 +0000
Subject: [PATCH] removed the deprecated call
---
misc-scripts/alt_alleles/alt_alleles.pl | 4 +---
1 file changed, 1 insertion(+), 3 deletions(-)
diff --git a/misc-scripts/alt_alleles/alt_alleles.pl b/misc-scripts/alt_alleles/alt_alleles.pl
index c171ad757a..747e1a611b 100644
--- a/misc-scripts/alt_alleles/alt_alleles.pl
+++ b/misc-scripts/alt_alleles/alt_alleles.pl
@@ -90,9 +90,7 @@ print "\nFetched ".(scalar(keys %vega_to_ensembl_core_gene_id))." Vega Stable ID
# Get AltAlleles from vega
#
my $vega_aaga = $vega_dba->get_AltAlleleGroupAdaptor();
-#TODO deprecated call in 74
-my $vega_groups = $vega_aaga->fetch_all_Groups();
-# my $groups = $vega_aaga->fetch_all(); #replace the above with me ASAP
+my $vega_groups = $vega_aaga->fetch_all();
my $cnt_vega_rows = @{$vega_groups};
print STDERR "Fetched $cnt_vega_rows rows from the vega db alt_allele table\n";
--
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