From a62e695f2403f2ce9cf399f8b9b9ef86092602fc Mon Sep 17 00:00:00 2001 From: Patrick Meidl <pm2@sanger.ac.uk> Date: Thu, 3 Nov 2005 14:09:56 +0000 Subject: [PATCH] changed Vega gene count attributes to use new biotype/status identifiers --- misc-scripts/attribute_types/attrib_type.txt | 30 ++++++++++---------- 1 file changed, 15 insertions(+), 15 deletions(-) diff --git a/misc-scripts/attribute_types/attrib_type.txt b/misc-scripts/attribute_types/attrib_type.txt index 18c2b89620..f51d3d027d 100644 --- a/misc-scripts/attribute_types/attrib_type.txt +++ b/misc-scripts/attribute_types/attrib_type.txt @@ -100,23 +100,23 @@ 31 fpc_clone_id fpc clone # additional gene counts for Vega (see GeneCount for general description) -32 NovelCDSCount 14:Novel CDS Total Number of Novel CDSs -33 NovelTransCount 16:Novel transcripts Total Number of Novel transcripts -34 PutTransCount 24:Putative transcripts Total Number of Putative transcripts -35 PredTransCount 30:Predicted transcripts Total Number of Predicted transcripts -36 IgSegCount 26:Ig segments Total Number of Ig Segments -37 IgPsSegCount 28:Ig pseudogene Segments Total Number of Ig Pseudogene Segments -38 TotPsCount 18:Total pseudogenes Total Number of Pseudogenes -39 UnclassPsCount 23:Unclassified pseudogenes Number of Unclassified pseudogenes -40 ProcPsCount 20:Processed pseudogenes Number of Processed pseudogenes -41 UnprocPsCount 22:Unprocessed pseudogenes Number of Unprocessed pseudogenes -42 KnwnprogCount 13:Known genes (in progress) Number of Known Genes in progress -43 NovCDSprogCount 15:Novel CDS (in progress) Number of novel CDS in progress +32 NovelCDSCount protein_coding_NOVEL Total Number of Novel CDSs +33 NovelTransCount processed_transcript_NOVEL Total Number of Novel transcripts +34 PutTransCount processed_transcript_PUTATIVE Total Number of Putative transcripts +35 PredTransCount protein_coding_PREDICTED Total Number of Predicted transcripts +36 IgSegCount Ig_segment_NOVEL Total Number of Ig Segments +37 IgPsSegCount Ig_pseudogene_segment_NOVEL Total Number of Ig Pseudogene Segments +38 TotPsCount total_pseudogene_NOVEL Total Number of Pseudogenes +39 UnclassPsCount pseudogene_NOVEL Number of Unclassified pseudogenes +40 ProcPsCount processed_pseudogene_NOVEL Number of Processed pseudogenes +41 UnprocPsCount unprocessed_pseudogene_NOVEL Number of Unprocessed pseudogenes +42 KnwnprogCount protein_coding_in_progress_KNOWN Number of Known Genes in progress +43 NovCDSprogCount protein_coding_in_progress_NOVEL Number of novel CDS in progress # Vega annotation stats -44 AnnotSeqLength 03:Annotated sequence length Total length of annotated clone sequence -45 TotCloneNum 08:Total number of clones Total number of clones -46 NumAnnotClone 10:Number of annotated clones Number of annotated clones +44 AnnotSeqLength Annotated sequence length Total length of annotated clone sequence +45 TotCloneNum Total number of clones Total number of clones +46 NumAnnotClone Number of annotated clones Number of annotated clones # Acknowledgements for manual annotation of this seq_region 47 ack Acknowledgement Acknowledgement -- GitLab