From a783b9f7e610a5bc2c3d3bc584942f8f5c264155 Mon Sep 17 00:00:00 2001 From: Ian Longden <ianl@sanger.ac.uk> Date: Fri, 4 Mar 2011 09:51:25 +0000 Subject: [PATCH] updated to lastest versions of files. Plus ZFIN descriptions file --- misc-scripts/xref_mapping/xref_config.ini | 18 ++++++++---------- 1 file changed, 8 insertions(+), 10 deletions(-) diff --git a/misc-scripts/xref_mapping/xref_config.ini b/misc-scripts/xref_mapping/xref_config.ini index dfb69bf2c8..3317ca19e1 100644 --- a/misc-scripts/xref_mapping/xref_config.ini +++ b/misc-scripts/xref_mapping/xref_config.ini @@ -967,7 +967,7 @@ prio_descr = main parser = GOSlimParser release_uri = data_uri = script: -#data_uri = script:host=>ens-staging1,dbname=>ensembl_ontology_61, +#data_uri = script:host=>ens-staging1,dbname=>ensembl_ontology_62, [source goslim_goa::EG] # Used by Ensembl Genomes @@ -1106,7 +1106,6 @@ prio_descr = vega parser = HGNC_ENSTParser release_uri = data_uri = script: -#data_uri = script:vuser=>ensro,vhost=>ens-research,vdbname=>st3_homo_sapiens_vega_59_20100903,vport=>3306,cuser=>ensro,chost=>ens-staging1,cport=>3306,cdbname=>homo_sapiens_core_61_37f, [source HGNC::homo_sapiens#02] @@ -1440,7 +1439,6 @@ prio_descr = vega parser = MGI_Vega_Parser release_uri = data_uri = script: -#data_uri = script:vhost=>ens-research,vport=>3306,vdbname=>st3_mus_musculus_vega_61_20100917,chost=>ens-staging2,cport=>3306,cdbname=>mus_musculus_core_61_37n, [source MGI::mus_musculus#05] # Used by mus_musculus @@ -1463,7 +1461,7 @@ priority = 3 prio_descr = ccds parser = MGI_CCDS_Parser release_uri = -data_uri = script:wget=>ftp://ftp.ncbi.nlm.nih.gov/pub/CCDS/current_mouse/CCDS.20071128.txt, +data_uri = script:wget=>ftp://ftp.ncbi.nlm.nih.gov/pub/CCDS/current_mouse/CCDS.20110124.txt, @@ -2458,7 +2456,6 @@ prio_descr = curated with transcript number postfix parser = curated_transcriptParser release_uri = data_uri = script: -#data_uri = script:vhost=>ens-research,vdbname=>st3_homo_sapiens_vega_59_20100903,vuser=>ensro,vport=>3306,chost=>ens-staging,cport=>3306,cdbname=>homo_sapiens_core_61_37f, [source HGNC_transcript_name] @@ -2489,7 +2486,6 @@ prio_descr = parser = curated_transcriptParser release_uri = data_uri = script: -#data_uri = script:vhost=>ens-research,vport=>3306,vdbname=>st3_mus_musculus_vega_61_20100917,chost=>ens-staging2,cport=>3306,cdbname=>mus_musculus_core_61_37n, [source MGI_automatic_transcript::mus_musculus] @@ -2578,7 +2574,7 @@ data_uri = ftp://ftp.xenbase.org/pub/GenePageReports/GenePageEnsemblModel # Used by danio_rerio name = ZFIN_ID download = Y -order = 30 +order = 31 priority = 2 prio_descr = uniprot/refseq parser = ZFINParser @@ -2597,7 +2593,8 @@ priority = 1 prio_descr = vega parser = ZFIN_DARTParser release_uri = -data_uri = script:vuser=>ensro,vhost=>ens-staging,vdbname=>danio_rerio_vega_61_9a,vport=>3306, +data_uri = script: +#vuser=>ensro,vhost=>ens-staging,vdbname=>danio_rerio_vega_62_9b,vport=>3306, [source ZFIN_ID::danio_rerio#03] # Used by danio_rerio @@ -2608,7 +2605,8 @@ priority = 10 prio_descr = description_only parser = ZFINDescParser release_uri = -data_uri = http://zfin.org/data_transfer/Downloads/genetic_markers.txt +#data_uri = http://zfin.org/data_transfer/Downloads/genetic_markers.txt +data_uri = ftp://zfin.org/pub/transfer/MEOW/zfin_genes.txt [source ZFIN_ID_curated_transcript::danio_rerio] name = ZFIN_ID_curated_transcript_notransfer @@ -3366,7 +3364,7 @@ source = ZFIN_ID::danio_rerio#01 source = ZFIN_ID::danio_rerio#02 source = ZFIN_ID::danio_rerio#03 source = ncRNA::MULTI -#source = ZFIN_ID_curated_transcript::danio_rerio +source = ZFIN_ID_curated_transcript::danio_rerio [species dasypus_novemcinctus] taxonomy_id = 9361 -- GitLab