From aa6d0d24590a0d136830873bfbcf95fec3cba3cd Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Wed, 4 Nov 2009 10:07:58 +0000
Subject: [PATCH] Do not get HGNC from Uniprot anymore as this makes it
circular
---
misc-scripts/xref_mapping/XrefParser/UniProtParser.pm | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/misc-scripts/xref_mapping/XrefParser/UniProtParser.pm b/misc-scripts/xref_mapping/XrefParser/UniProtParser.pm
index c20543083d..b75aef5409 100644
--- a/misc-scripts/xref_mapping/XrefParser/UniProtParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/UniProtParser.pm
@@ -168,10 +168,10 @@ sub create_xrefs {
my %dependent_sources = $self->get_dependent_xref_sources(); # name-id hash
-
- if(defined($dependent_sources{'HGNC'})){
- $dependent_sources{'HGNC'} = XrefParser::BaseParser->get_source_id_for_source_name("HGNC","uniprot");
- }
+# get from HGNC file
+# if(defined($dependent_sources{'HGNC'})){
+# $dependent_sources{'HGNC'} = XrefParser::BaseParser->get_source_id_for_source_name("HGNC","uniprot");
+# }
if(defined($dependent_sources{'MGI'})){
$dependent_sources{'MGI'} = XrefParser::BaseParser->get_source_id_for_source_name("MGI","uniprot");
@@ -488,6 +488,9 @@ sub create_xrefs {
if($source =~ "UCSC"){
next;
}
+ if($source =~ "HGNC"){
+ next;
+ }
if (exists $dependent_sources{$source} ) {
# create dependent xref structure & store it
my %dep;
--
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