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Commit aa6d0d24 authored by Ian Longden's avatar Ian Longden
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Do not get HGNC from Uniprot anymore as this makes it circular

parent 0323765d
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Showing with 7 additions and 4 deletions
misc-scripts/xref_mapping/XrefParser/UniProtParser.pm
View file @ aa6d0d24
...@@ -168,10 +168,10 @@ sub create_xrefs { ...@@ -168,10 +168,10 @@ sub create_xrefs {
my %dependent_sources = $self->get_dependent_xref_sources(); # name-id hash my %dependent_sources = $self->get_dependent_xref_sources(); # name-id hash
# get from HGNC file
if(defined($dependent_sources{'HGNC'})){ # if(defined($dependent_sources{'HGNC'})){
$dependent_sources{'HGNC'} = XrefParser::BaseParser->get_source_id_for_source_name("HGNC","uniprot"); # $dependent_sources{'HGNC'} = XrefParser::BaseParser->get_source_id_for_source_name("HGNC","uniprot");
} # }
if(defined($dependent_sources{'MGI'})){ if(defined($dependent_sources{'MGI'})){
$dependent_sources{'MGI'} = XrefParser::BaseParser->get_source_id_for_source_name("MGI","uniprot"); $dependent_sources{'MGI'} = XrefParser::BaseParser->get_source_id_for_source_name("MGI","uniprot");
...@@ -488,6 +488,9 @@ sub create_xrefs { ...@@ -488,6 +488,9 @@ sub create_xrefs {
if($source =~ "UCSC"){ if($source =~ "UCSC"){
next; next;
} }
if($source =~ "HGNC"){
next;
}
if (exists $dependent_sources{$source} ) { if (exists $dependent_sources{$source} ) {
# create dependent xref structure & store it # create dependent xref structure & store it
my %dep; my %dep;
......
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