From ab62fc4b32ecfeb61b79269cc13f5abdf538c3fd Mon Sep 17 00:00:00 2001
From: Abel Ureta-Vidal <abel@sanger.ac.uk>
Date: Tue, 5 Oct 2004 08:16:20 +0000
Subject: [PATCH] Added -noflush option and help menu
---
scripts/CopyDBoverServer.pl | 25 ++++++++++++++-----------
1 file changed, 14 insertions(+), 11 deletions(-)
diff --git a/scripts/CopyDBoverServer.pl b/scripts/CopyDBoverServer.pl
index a0cfa59743..16fae32b8c 100755
--- a/scripts/CopyDBoverServer.pl
+++ b/scripts/CopyDBoverServer.pl
@@ -6,7 +6,7 @@ use Cwd 'chdir';
$| = 1;
-my $usage = "\nUsage: $0 -pass XXXXX input_file
+my $usage = "\nUsage: $0 -pass XXXXX [-noflush] input_file
Copy mysql databases between different servers and run myisamchk on the indices when copied.
@@ -17,29 +17,32 @@ source_server\\tsource_port\\tsource_db\\tdestination_server\\tdestination_port\
e.g.
#source_server\\tsource_port\\tsource_db\\tdestination_server\\tdestination_port\\tdestination_db
-ecs3d.internal.sanger.ac.uk 3306 homo_sapiens_core_13_31 ecs2d.internal.sanger.ac.uk 3306 homo_sapiens_core_14_31
+ecs3.internal.sanger.ac.uk 3307 homo_sapiens_core_13_31 ecs2.internal.sanger.ac.uk 3364 homo_sapiens_core_14_31
Lines starting with # are ignored and considered as comments.
RESTRICTIONS:
============
1- The destination_server has to match the generic server you are running the script on,
- either ecs1, ecs2 or ecs3, otherwise the copying process for the corresponding database
+ either ecs1, ecs2, ecs3, ecs4 or ia64[ef] otherwise the copying process for the corresponding database
is skipped
-2- This script works only for copy processes from and to ecs nodes, namely
- ecs1[abcdefgh]
- ecs2[abcdef]
- ecs4
- ecs3d only
+2- This script works only for copy processes from and to ecs/ia64 nodes, namely
+ ecs1[abcdefgh] port 3306
+ ecs2 port: 336[1-6]
+ ecs3 port: 300[47]
+ ecs4 port: 335[0-3]
+ ia64[ef] port: 3306
3- -pass is compulsory and is expected to be the mysql password to connect as ensadmin
";
my $help = 0;
my $pass;
+my $noflush = 0;
GetOptions('h' => \$help,
- 'pass=s' => \$pass);
+ 'pass=s' => \$pass,
+ 'noflush' => \$noflush);
if ($help || scalar @ARGV == 0 || ! defined $pass) {
print $usage;
@@ -64,6 +67,7 @@ my %mysql_directory_per_svr = ('ecs1a:3306' => "/mysql1a/current/var",
'ecs2:3365' => "/mysql/data_3365/databases",
'ecs2:3366' => "/mysql/data_3366/databases",
'ecs3d:3307' => "/mysqld/current/var",
+ 'ecs3:3307' => "/mysqld/current/var",
'ecs3:3304' => "/mysqld/current/var",
'ecs4:3350' => "/mysql-3350/databases",
'ecs4:3351' => "/mysql-3351/databases",
@@ -77,7 +81,6 @@ my $generic_working_host = $working_host;
$generic_working_host =~ s/(ecs[1234]).*/$1/;
my $working_dir = $ENV{'PWD'};
my %already_flushed;
-#$already_flushed{'ecs3.internal.sanger.ac.uk'} = 1;
# parsing/checking the input file
@@ -187,7 +190,7 @@ foreach my $db_to_copy (@dbs_to_copy) {
$destination_srv = undef;
# flush tables; in the source server
- unless (defined $already_flushed{$db_to_copy->{src_srv}}) {
+ unless (defined $already_flushed{$db_to_copy->{src_srv}} || $noflush) {
print STDERR "// flushing tables in $db_to_copy->{src_srv}...";
my $flush_cmd = "echo \"flush tables;\" | mysql -h $db_to_copy->{src_srv} -u ensadmin -p$pass -P$source_port";
if (system($flush_cmd) == 0) {
--
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