From accc44448d25bf1e927ef1b3440572111c5a44ec Mon Sep 17 00:00:00 2001 From: Fiona Cunningham <fiona@ebi.ac.uk> Date: Thu, 3 Aug 2006 12:50:43 +0000 Subject: [PATCH] updated Hs ini file --- docs/ensembl_das/Homo_sapiens.ini | 16 +--------------- 1 file changed, 1 insertion(+), 15 deletions(-) diff --git a/docs/ensembl_das/Homo_sapiens.ini b/docs/ensembl_das/Homo_sapiens.ini index 2b17b99e82..b80c33496d 100644 --- a/docs/ensembl_das/Homo_sapiens.ini +++ b/docs/ensembl_das/Homo_sapiens.ini @@ -22,25 +22,17 @@ # Assembly info ENSEMBL_PREFIX = ENS ; EnsEMBL gene id prefix ENSEMBL_GOLDEN_PATH = NCBI34 ; Indentifier for the golden path type -ASSEMBLY_STATUS = FULL ENSEMBL_CHROMOSOMES = [ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y ] # Search config ; list of features that are indexed ready for searching ENSEMBL_SEARCH_IDXS = [ Disease Domain EST External Family Gene MRNA Marker Peptide Protein SNP SangerProject Sequence Unigene ] -# Das - default DAS mapmaster for "uploadable DAS" -ENSEMBL_DAS_MAPMASTER_DSN = ensembl1834 - -# Biggest unit of mapping -ENSEMBL_BUM = Chromosome # Display info SPECIES_COMMON_NAME = Human SPECIES_BIO_NAME = Homo sapiens SPECIES_CODE = hs -GENERATE_HOME_PAGE = yes -CYTOVIEW_ENABLED = 1 ENSEMBL_PREDICTION_TEXT_CORE = Genes were annotated by the Ensembl automatic analysis pipeline using either a GeneWise model from a human/vertebrate protein, a set of aligned human cDNAs followed by GenomeWise for ORF prediction or from Genscan exons supported by protein, cDNA and EST evidence. GeneWise models are further combined with available aligned cDNAs to annotate UTRs. ENSEMBL_PREDICTION_TEXT_PSEUDOGENE = Potential processed pseudogenes are detected from genewise predictions that have a single-exon with frameshifts, have their evidence spliced elsewhere in the genome and have no match in the syntenic genomic region in mouse. @@ -56,13 +48,7 @@ ENSEMBL_PREDICTION_TEXT_VEGA = Finished genomic sequence is analysed on a clone [databases] ENSEMBL_DB = homo_sapiens_core_19_34b -ENSEMBL_DISEASE = homo_sapiens_disease_19_34b -ENSEMBL_EST = homo_sapiens_est_19_34b -ENSEMBL_ESTGENE = homo_sapiens_estgene_19_34b -ENSEMBL_HAPLOTYPE = homo_sapiens_haplotype_19_34b -ENSEMBL_LITE = homo_sapiens_lite_19_34b ENSEMBL_VEGA = homo_sapiens_vega_19_34b -ENSEMBL_SNP = homo_sapiens_snp_19_34b # The following are extra configuration parameters for the databases # You can overide the default settings for specific databases. Just add a @@ -79,7 +65,7 @@ ENSEMBL_SNP = homo_sapiens_snp_19_34b # Help Database Config #################### -[ENSEMBL_HELP] +[ENSEMBL_WEBSITE] # Accept defaults -- GitLab