From ad3ae9e9f2c230edb25967afc12418626ecf0f45 Mon Sep 17 00:00:00 2001
From: Simon Brent <sb23@sanger.ac.uk>
Date: Wed, 19 Oct 2011 12:21:02 +0000
Subject: [PATCH] merging changes from branch-ensembl-64
---
.../Bio/EnsEMBL/Utils/ConversionSupport.pm | 28 +++++++++----------
1 file changed, 14 insertions(+), 14 deletions(-)
diff --git a/modules/Bio/EnsEMBL/Utils/ConversionSupport.pm b/modules/Bio/EnsEMBL/Utils/ConversionSupport.pm
index b9f7c85fd7..1662a322dd 100644
--- a/modules/Bio/EnsEMBL/Utils/ConversionSupport.pm
+++ b/modules/Bio/EnsEMBL/Utils/ConversionSupport.pm
@@ -165,23 +165,23 @@ sub parse_common_options {
# if logpath & logfile are not set, set them here to /ensemblweb/vega_dev/shared/logs/conversion/DBNAME/SCRIPNAME_NN.log
- if (defined($self->param('log_base_path'))) {
- my $dbname = $self->param('dbname');
- $dbname =~ s/^vega_//;
- if (not (defined($self->param('logpath')))){
- $self->param('logpath', $self->param('log_base_path')."/".$dbname."/" );
- }
- if ( (not defined $self->param('logfile') ) && (not defined $self->param('nolog') ) ){
- my $log = $Script;
- $log =~ s/.pl$//g;
- my $counter;
- for ($counter=1 ; (-e $self->param('logpath')."/".$log."_".sprintf("%03d", $counter).".log"); $counter++){
+ if (! defined($self->param('log_base_path'))) {
+ $self->param('log_base_path','/ensemblweb/shared/logs/conversion/');
+ }
+ my $dbname = $self->param('dbname');
+ $dbname =~ s/^vega_//;
+ if (not (defined($self->param('logpath')))){
+ $self->param('logpath', $self->param('log_base_path')."/".$dbname."/" );
+ }
+ if ( (not defined $self->param('logfile') ) && (not defined $self->param('nolog') ) ){
+ my $log = $Script;
+ $log =~ s/.pl$//g;
+ my $counter;
+ for ($counter=1 ; (-e $self->param('logpath')."/".$log."_".sprintf("%03d", $counter).".log"); $counter++){
# warn $self->param('logpath')."/".$log."_".$counter.".log";
- }
- $self->param('logfile', $log."_".sprintf("%03d", $counter).".log");
}
+ $self->param('logfile', $log."_".sprintf("%03d", $counter).".log");
}
-
return(1);
}
--
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