From b06252a0d78ab63fd1d21ce102854894a3bc7634 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Fri, 4 Nov 2016 09:18:24 +0000
Subject: [PATCH] skip null stable ids in otherfeatures dbs
---
misc-scripts/stable_id_lookup/populate_stable_id_lookup.pl | 1 +
1 file changed, 1 insertion(+)
diff --git a/misc-scripts/stable_id_lookup/populate_stable_id_lookup.pl b/misc-scripts/stable_id_lookup/populate_stable_id_lookup.pl
index 7425b7f50c..dbc9f64094 100644
--- a/misc-scripts/stable_id_lookup/populate_stable_id_lookup.pl
+++ b/misc-scripts/stable_id_lookup/populate_stable_id_lookup.pl
@@ -368,6 +368,7 @@ sub insert_ids {
my $status = $tuple_status[$tuple];
$status = [0, "Skipped"] unless defined $status;
next unless ref $status;
+ next unless defined $ids[$type];
printf STDERR "Failed to insert (%s, %s, %s, %s): %s\n",
$ids[$tuple], $species_id[$tuple], $db_type[$tuple], $object_type[$tuple], $status->[1];
}
--
GitLab