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Commit b07e9eb4 authored by Graham McVicker's avatar Graham McVicker
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made remap method static

parent 2351bc35
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Showing with 4 additions and 4 deletions
modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
View file @ b07e9eb4
......@@ -503,7 +503,7 @@ sub _slice_fetch {
# features may still have to have coordinates made relative to slice
# start
$fs = $self->_remap($fs, $mapper, $slice);
$fs = _remap($fs, $mapper, $slice);
push @features, @$fs;
} else {
......@@ -534,7 +534,7 @@ sub _slice_fetch {
my $fs = $self->generic_fetch($constraint, $mapper, $slice);
$fs = $self->_remap($fs, $mapper, $slice);
$fs = _remap($fs, $mapper, $slice);
push @features, @$fs;
......@@ -550,7 +550,7 @@ sub _slice_fetch {
"${tab_syn}.seq_region_end >= " . $coords[$i]->start();
my $fs = $self->generic_fetch($constraint,$mapper,$slice);
$fs = $self->_remap($fs, $mapper, $slice);
$fs = _remap($fs, $mapper, $slice);
push @features, @$fs;
}
......@@ -671,7 +671,7 @@ sub _check_start_end_strand {
# converted and placed on the slice.
#
sub _remap {
my ($self, $features, $mapper, $slice) = @_;
my ($features, $mapper, $slice) = @_;
#check if any remapping is actually needed
if(@$features && (!$features->[0]->isa('Bio::EnsEMBL::Feature') ||
......
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