From b0a5960a004667821ebce2816c735dac33c04e67 Mon Sep 17 00:00:00 2001
From: Graham McVicker <mcvicker@sanger.ac.uk>
Date: Thu, 11 Mar 2004 16:26:51 +0000
Subject: [PATCH] fix: chimp karyotype features (if they even existed) would be
on scaffolds since there are no chromosomes
---
misc-scripts/surgery/SeqStoreConverter/PanTroglodytes.pm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/misc-scripts/surgery/SeqStoreConverter/PanTroglodytes.pm b/misc-scripts/surgery/SeqStoreConverter/PanTroglodytes.pm
index 4e3b02d211..910aa16fb5 100644
--- a/misc-scripts/surgery/SeqStoreConverter/PanTroglodytes.pm
+++ b/misc-scripts/surgery/SeqStoreConverter/PanTroglodytes.pm
@@ -37,7 +37,7 @@ sub create_coord_systems {
qtl_feature => 'scaffold',
misc_feature => 'scaffold',
prediction_transcript => 'contig',
- karyotype => 'chromosome');
+ karyotype => 'scaffold');
$self->debug("Building coord_system table");
--
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