From b1687015754682902a1687a3b29362810610d85b Mon Sep 17 00:00:00 2001
From: Kevin Howe <klh@ebi.ac.uk>
Date: Thu, 23 Oct 2014 12:10:24 +0100
Subject: [PATCH] LSF profile file now optional for resubmission as well as
initial submission
---
.../xref_mapping/XrefMapper/Methods/ExonerateBasic.pm | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateBasic.pm b/misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateBasic.pm
index 246ce8d43c..4b5dd1636b 100644
--- a/misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateBasic.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/Methods/ExonerateBasic.pm
@@ -295,7 +295,10 @@ EON
my $exe_file = $root_dir."/".$unique_name.".submit";
open(my $rh,">", $exe_file) || die "Could not open file $exe_file";
- print $rh ". /usr/local/lsf/conf/profile.lsf\n";
+ my $lsf_conf = "/usr/local/lsf/conf/profile.lsf";
+ if (-e $lsf_conf) {
+ print $rh ". $lsf_conf\n";
+ }
print $rh $command."\n";
close $rh;
--
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