From b4fa1c13924346740627706f3e85f0a58edf84bd Mon Sep 17 00:00:00 2001 From: Glenn Proctor <gp1@sanger.ac.uk> Date: Wed, 21 Sep 2005 10:04:46 +0000 Subject: [PATCH] Added Celera and symbol stuff for anopheles --- misc-scripts/xref_mapping/sql/populate_metadata.sql | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/misc-scripts/xref_mapping/sql/populate_metadata.sql b/misc-scripts/xref_mapping/sql/populate_metadata.sql index dc02df79c1..0371e7756d 100644 --- a/misc-scripts/xref_mapping/sql/populate_metadata.sql +++ b/misc-scripts/xref_mapping/sql/populate_metadata.sql @@ -97,6 +97,10 @@ INSERT INTO source VALUES (2801, "Uniprot/SWISSPROT_predicted", 1, 'N',1); INSERT INTO source VALUES (2802, "Uniprot/SPTREMBL_predicted", 1, 'N',1); INSERT INTO source VALUES (2810, "EMBL_predicted", 1, 'N',1); INSERT INTO source VALUES (2840, 'protein_id_predicted', 1, 'N', 2); +INSERT INTO source VALUES (2850, "Celera_Gene", 1, 'Y', 3); +INSERT INTO source VALUES (2852, "Celera_Pep", 1, 'Y', 3); +INSERT INTO source VALUES (2854, "Celera_Trans", 1, 'Y', 3); +INSERT INTO source VALUES (2856, "Anopheles_symbol", 1, 'Y', 3); ################################################################################ # Files to fetch data from @@ -549,10 +553,18 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (2,7165,'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz',now(),now(),'UniProtParser'); +# Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300,7165,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz',now(),now(),'InterproParser'); +# Unigene INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (6,7165,'ftp://ftp.ncbi.nih.gov/repository/UniGene/Anopheles_gambiae/Aga.seq.uniq.gz ftp://ftp.ncbi.nih.gov/repository/UniGene/Anopheles_gambiae/Aga.data.gz',now(),now(),'UniGeneParser'); +# Celera +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (2852, 7165,'/Celera_Pep/consensus-proteins_xref.fasta', now(), now(), "CeleraProteinParser"); + +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (2854, 7165,'/Celera_trans/consensus-transcripts_xref.fasta', now(), now(), "CeleraTranscriptParser"); + +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (2856, 7165,'/Anopheles_symbol/GeneName_translation_UniqID.txt', now(), now(), "AnophelesSymbolParser"); # -------------------------------------------------------------------------------- -- GitLab