diff --git a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm index 79a8c743408584a996d3e1c3a69f9aabcbfc79c4..987303a8f19ace8d342bdb86fccda9d64034e43d 100644 --- a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm +++ b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm @@ -66,7 +66,7 @@ sub pipeline_analyses { '3->C' => ['CodingDensity'], 'C->3' => ['NonCodingDensity'], '3->A' => ['PercentRepeat', 'CodingDensity', 'NonCodingDensity', 'PercentGC'], - '2->A' => ['GeneGC', 'PepStats', 'GeneCount', 'ConstitutiveExons'], + '2->A' => ['GeneGC', 'PepStats', 'GeneCount', 'ConstitutiveExons', 'ConstitutiveExonsVega', 'PepStatsVega'], 'A->1' => ['Notify'], }, }, @@ -94,6 +94,31 @@ sub pipeline_analyses { -rc_name => 'normal', }, + { + -logic_name => 'ConstitutiveExonsVega', + -module => 'Bio::EnsEMBL::Pipeline::Production::ConstitutiveExons', + -parameters => { + dbtype => 'vega', + }, + -max_retry_count => 5, + -hive_capacity => 10, + -rc_name => 'normal', + -can_be_empty => 1, + }, + + { + -logic_name => 'PepStatsVega', + -module => 'Bio::EnsEMBL::Pipeline::Production::PepStats', + -parameters => { + tmpdir => '/tmp', binpath => '/software/pubseq/bin/emboss', + dbtype => 'vega', + }, + -max_retry_count => 5, + -hive_capacity => 10, + -rc_name => 'mem', + -can_be_empty => 1, + }, + { -logic_name => 'GeneCount', -module => 'Bio::EnsEMBL::Pipeline::Production::GeneCount',