From b650956af1e491341b76bb67a466ad121ec006c0 Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Tue, 5 Aug 2008 09:51:48 +0000
Subject: [PATCH] Don't delete the GeneGC entry from attrib_type, since if it
is deleted it will be re-created later in the script with a different
attrib_type_id, which will be inconsistent with that in the attrib_type.txt
file.
---
misc-scripts/frameshift_transcript_attribs.pl | 2 +-
misc-scripts/gene_gc.pl | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/misc-scripts/frameshift_transcript_attribs.pl b/misc-scripts/frameshift_transcript_attribs.pl
index 0286db00e2..9bd480db6f 100644
--- a/misc-scripts/frameshift_transcript_attribs.pl
+++ b/misc-scripts/frameshift_transcript_attribs.pl
@@ -52,7 +52,7 @@ for my $dbname ( @dbnames ) {
if (!$nodelete) {
print STDERR "Deleting existing 'Frameshift' transcript attributes\n";
- my $dsth = $db_adaptor->dbc()->prepare("DELETE ta, at FROM transcript_attrib ta, attrib_type at WHERE at.attrib_type_id=ta.attrib_type_id AND at.code='Frameshift'");
+ my $dsth = $db_adaptor->dbc()->prepare("DELETE ta FROM transcript_attrib ta, attrib_type at WHERE at.attrib_type_id=ta.attrib_type_id AND at.code='Frameshift'");
$dsth->execute();
}
diff --git a/misc-scripts/gene_gc.pl b/misc-scripts/gene_gc.pl
index 74829f3b99..737138b3aa 100644
--- a/misc-scripts/gene_gc.pl
+++ b/misc-scripts/gene_gc.pl
@@ -81,7 +81,7 @@ sub delete_existing {
my $dba = shift;
print STDERR "Deleting existing 'GeneGC' gene attributes\n";
- my $dsth = $dba->dbc()->prepare("DELETE ga, at FROM gene_attrib ga, attrib_type at WHERE at.attrib_type_id=ga.attrib_type_id AND at.code='GeneGC'");
+ my $dsth = $dba->dbc()->prepare("DELETE ga FROM gene_attrib ga, attrib_type at WHERE at.attrib_type_id=ga.attrib_type_id AND at.code='GeneGC'");
$dsth->execute();
}
--
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