diff --git a/misc-scripts/xref_mapping/xref_config.ini b/misc-scripts/xref_mapping/xref_config.ini
index 7eb66262b3db67c1a07f3cc4433a6d34c3b5b550..52ecf9a976305bc2d9cec37427dd0be89305da8e 100644
--- a/misc-scripts/xref_mapping/xref_config.ini
+++ b/misc-scripts/xref_mapping/xref_config.ini
@@ -4021,7 +4021,7 @@ source          = RefSeq_peptide::MULTI-fungi
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -4041,7 +4041,7 @@ source          = RefSeq_peptide::MULTI-fungi
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -4060,7 +4060,7 @@ source          = RefSeq_peptide::MULTI-invertebrate
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -4078,7 +4078,7 @@ source          = RefSeq_peptide::MULTI-invertebrate
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -4115,7 +4115,7 @@ source          = RefSeq_dna::MULTI-protozoa
 source          = RefSeq_peptide::MULTI-protozoa
 source          = PHIbase::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -4135,7 +4135,7 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = PHIbase::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -4173,7 +4173,7 @@ source          = RefSeq_peptide::MULTI-fungi
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -4193,7 +4193,7 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = PHIbase::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -4213,7 +4213,7 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = PHIbase::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -4390,7 +4390,7 @@ source          = RefSeq_peptide::MULTI-protozoa
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5170,7 +5170,7 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = Uniprot/SWISSPROT::DIRECT
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5188,7 +5188,7 @@ source          = RefSeq_peptide::MULTI-complete
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5209,7 +5209,7 @@ source          = RefSeq_peptide::MULTI-complete
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5228,7 +5228,7 @@ source          = RefSeq_peptide::MULTI-complete
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5247,7 +5247,7 @@ source          = RefSeq_peptide::MULTI-complete
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5266,7 +5266,7 @@ source          = RefSeq_peptide::MULTI-complete
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5285,7 +5285,7 @@ source          = RefSeq_peptide::MULTI-complete
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5476,7 +5476,7 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = PHIbase::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5496,7 +5496,7 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = PHIbase::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5515,7 +5515,7 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = PHIbase::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5534,7 +5534,7 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = PHIbase::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5554,7 +5554,7 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = PHIbase::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 
@@ -5574,7 +5574,7 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = PHIbase::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5665,7 +5665,7 @@ source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source          = PHIbase::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = misc_EG::EG
@@ -5754,7 +5754,7 @@ source          = RefSeq_peptide::MULTI-Plants
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = goslim_goa::EG
@@ -5771,7 +5771,7 @@ source          = RefSeq_peptide::MULTI-Plants
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = goslim_goa::EG
@@ -5788,7 +5788,7 @@ source          = RefSeq_peptide::MULTI-Plants
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = goslim_goa::EG
@@ -5805,7 +5805,7 @@ source          = RefSeq_peptide::MULTI-Plants
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
 source		= RFAM::EG
-source		= miRBase
+source		= miRBase::MULTI
 source		= RNAMMER::MULTI
 source		= TRNASCAN_SE::MULTI
 source          = goslim_goa::EG