diff --git a/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm index 19f260d4ddd48d08560bcded782766b8e4074f7c..06818b65ad5bc3d7444c372c279f253166c8dde9 100644 --- a/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm @@ -706,6 +706,53 @@ sub fetch_all_by_exon_stable_id { return \@trans; } +=head2 fetch_all_by_source + + Arg [1] : String $source + listref of $sources + The source of the transcript to retrieve. You can also have a reference + to a list of sources in the event of needing several. + Example : $transcript = $transcript_adaptor->fetch_all_by_source('ensembl'); + $transcript = $transcript_adaptor->fetch_all_by_source(['ensembl','another_source']); + Description: Retrieves an array reference of transcript objects from the + database via its source or sources. + The transcript will be retrieved in its native coordinate system + (i.e. in the coordinate system it is stored in the database). + It may be converted to a different coordinate system through a + call to transform() or transfer(). If the transcript is not found + undef is returned instead. + Returntype : listref of Bio::EnsEMBL::Transcript + Exceptions : if we cant get the transcript in given coord system + Caller : general + Status : Stable + +=cut + +sub fetch_all_by_source { + my ($self, $source) = @_; + + if (!defined $source){ + throw("Source or listref of sources expected"); + } + my $constraint; + if (ref($source) eq 'ARRAY'){ + $constraint = "t.source IN ("; + foreach my $s (@{$source}){ + $constraint .= "?,"; + $self->bind_param_generic_fetch($s,SQL_VARCHAR); + } + chop($constraint); #remove last , from expression + $constraint .= ") and t.is_current = 1"; + + } + else{ + $constraint = "t.source = ? and t.is_current = 1"; + $self->bind_param_generic_fetch($source,SQL_VARCHAR); + } + my @transcripts = @{ $self->generic_fetch($constraint) }; + return \@transcripts ; +} + =head2 fetch_all_by_biotype Arg [1] : String $biotype diff --git a/modules/t/test-genome-DBs/circ/core/external_db.txt b/modules/t/test-genome-DBs/circ/core/external_db.txt index 4c50f3d449c710fb331a8e53d8f3ee66caab5a48..e0fd9d41e428d85291a956935bd26edcf42d23a8 100644 --- a/modules/t/test-genome-DBs/circ/core/external_db.txt +++ b/modules/t/test-genome-DBs/circ/core/external_db.txt @@ -494,7 +494,9 @@ 50681 Ens_Ac_transcript \N XREF 40 Ensembl Anole Lizard Transcript MISC \N \N \N 50682 BGI_Gene 1 XREF 50 BGI_2005_indica_Gene MISC \N \N BGI gene identifier 50683 GeneIndex 1 XREF 50 GeneIndex MISC \N \N \N -50684 EO 1 XREF 0 Environment Ontology MISC \N \N Plant environmental conditions ontology terms. \nMore information in there: \nhttp://www.gramene.org/plant_ontology/ontology_browse.html#eo +50684 EO 1 XREF 0 Environment Ontology MISC \N \N Plant environmental conditions ontology terms. \ +More information in there: \ +http://www.gramene.org/plant_ontology/ontology_browse.html#eo 50685 Ens_Rn_transcript \N XREF 5 Ensembl Rat Transcript MISC \N \N \N 50686 Ens_Rn_translation \N XREF 5 Ensembl Rat Translation MISC \N \N \N 50687 Uppsala University \N KNOWN 5 Uppsala University MISC \N \N \N @@ -541,7 +543,8 @@ 50731 Turkey Genome Consortium \N KNOWN 5 Turkey Genome Consortium MISC \N \N Turkey Genome Consortium 50732 Yutaka_Satou_Kyoto_University \N KNOWN 5 Yutaka Satou Kyoto University MISC \N \N Yutaka Satou Kyoto University 50733 Chicken_Genome_Consortium \N KNOWN 5 International Chicken Genome Consortium MISC \N \N \N -50734 TAIR_TRANSLATION 1 XREF 1 TAIR Translation identifiers MISC \N \N TAIR identifiers to link to Ensembl Translation identifiers. \nThe main requirement behind this entry, is to be able to link TAIR GO annotations to Ensembl Translations. +50734 TAIR_TRANSLATION 1 XREF 1 TAIR Translation identifiers MISC \N \N TAIR identifiers to link to Ensembl Translation identifiers. \ +The main requirement behind this entry, is to be able to link TAIR GO annotations to Ensembl Translations. 50735 AGI_GENE 1 XREF 1 AGI Gene MISC \N \N annotation provided by Arizona Genome Institute 50736 AGI_TRANSCRIPT 1 XREF 1 AGI Transcript MISC \N \N annotation provided by Arizona Genome Institute 50737 CGNC \N KNOWNXREF 100 CGNC Symbol PRIMARY_DB_SYNONYM \N \N \N diff --git a/modules/t/test-genome-DBs/circ/core/meta.txt b/modules/t/test-genome-DBs/circ/core/meta.txt index 85532a0ac04e3a1449674af02088d5ce0100af1a..ea475bca88d64097e2fb042752b3b2ad1077fcbc 100644 --- a/modules/t/test-genome-DBs/circ/core/meta.txt +++ b/modules/t/test-genome-DBs/circ/core/meta.txt @@ -8,8 +8,12 @@ 64 \N patch patch_73_74_d.sql|remove_qtl 65 \N patch patch_73_74_e.sql|remove_canonical_annotation 66 \N patch patch_73_74_f.sql|remove_pair_dna_align +67 \N patch patch_73_74_g.sql|add_transcript_idx_tise +68 \N patch patch_73_74_h.sql|alt_allele_unique_gene_idx +69 \N patch patch_74_75_a.sql|schema_version +70 \N patch patch_74_75_b.sql|transcript_source 1 \N schema_type core -2 \N schema_version 74 +2 \N schema_version 75 8 1 assembly.accession GCA_000292705.1 10 1 assembly.date 2012-08 7 1 assembly.default GCA_000292705.1 diff --git a/modules/t/test-genome-DBs/circ/core/table.sql b/modules/t/test-genome-DBs/circ/core/table.sql index 6ba0abc441d23c0555868acdb92c0fa221b637db..c54ddb394094d3993e8550969f6b9aac0d68e8c2 100644 --- a/modules/t/test-genome-DBs/circ/core/table.sql +++ b/modules/t/test-genome-DBs/circ/core/table.sql @@ -3,19 +3,20 @@ CREATE TABLE `alt_allele` ( `alt_allele_group_id` int(10) unsigned NOT NULL, `gene_id` int(10) unsigned NOT NULL, PRIMARY KEY (`alt_allele_id`), + UNIQUE KEY `gene_idx` (`gene_id`), KEY `gene_id` (`gene_id`,`alt_allele_group_id`) -) ENGINE=MyISAM DEFAULT CHARSET=latin1; +) ENGINE=MyISAM ; CREATE TABLE `alt_allele_attrib` ( `alt_allele_id` int(10) unsigned DEFAULT NULL, `attrib` enum('IS_REPRESENTATIVE','IS_MOST_COMMON_ALLELE','IN_CORRECTED_ASSEMBLY','HAS_CODING_POTENTIAL','IN_ARTIFICIALLY_DUPLICATED_ASSEMBLY','IN_SYNTENIC_REGION','HAS_SAME_UNDERLYING_DNA_SEQUENCE','IN_BROKEN_ASSEMBLY_REGION','IS_VALID_ALTERNATE','SAME_AS_REPRESENTATIVE','SAME_AS_ANOTHER_ALLELE','MANUALLY_ASSIGNED','AUTOMATICALLY_ASSIGNED') DEFAULT NULL, KEY `aa_idx` (`alt_allele_id`,`attrib`) -) ENGINE=MyISAM DEFAULT CHARSET=latin1; +) ENGINE=MyISAM ; CREATE TABLE `alt_allele_group` ( `alt_allele_group_id` int(10) unsigned NOT NULL AUTO_INCREMENT, PRIMARY KEY (`alt_allele_group_id`) -) ENGINE=MyISAM DEFAULT CHARSET=latin1; +) ENGINE=MyISAM ; CREATE TABLE `analysis` ( `analysis_id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, @@ -34,7 +35,7 @@ CREATE TABLE `analysis` ( `gff_feature` varchar(40) DEFAULT NULL, PRIMARY KEY (`analysis_id`), UNIQUE KEY `logic_name_idx` (`logic_name`) -) ENGINE=InnoDB AUTO_INCREMENT=39 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `analysis_description` ( `analysis_id` smallint(5) unsigned NOT NULL, @@ -43,7 +44,7 @@ CREATE TABLE `analysis_description` ( `displayable` tinyint(1) NOT NULL DEFAULT '1', `web_data` text, UNIQUE KEY `analysis_idx` (`analysis_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `assembly` ( `asm_seq_region_id` int(10) unsigned NOT NULL, @@ -56,7 +57,7 @@ CREATE TABLE `assembly` ( UNIQUE KEY `all_idx` (`asm_seq_region_id`,`cmp_seq_region_id`,`asm_start`,`asm_end`,`cmp_start`,`cmp_end`,`ori`), KEY `cmp_seq_region_idx` (`cmp_seq_region_id`), KEY `asm_seq_region_idx` (`asm_seq_region_id`,`asm_start`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `assembly_exception` ( `assembly_exception_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -71,13 +72,13 @@ CREATE TABLE `assembly_exception` ( PRIMARY KEY (`assembly_exception_id`), KEY `sr_idx` (`seq_region_id`,`seq_region_start`), KEY `ex_idx` (`exc_seq_region_id`,`exc_seq_region_start`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `associated_group` ( `associated_group_id` int(10) unsigned NOT NULL AUTO_INCREMENT, `description` varchar(128) DEFAULT NULL, PRIMARY KEY (`associated_group_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `associated_xref` ( `associated_xref_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -93,7 +94,7 @@ CREATE TABLE `associated_xref` ( KEY `associated_object_idx` (`object_xref_id`), KEY `associated_idx` (`xref_id`), KEY `associated_group_idx` (`associated_group_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `attrib_type` ( `attrib_type_id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, @@ -102,7 +103,7 @@ CREATE TABLE `attrib_type` ( `description` text, PRIMARY KEY (`attrib_type_id`), UNIQUE KEY `code_idx` (`code`) -) ENGINE=InnoDB AUTO_INCREMENT=391 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `coord_system` ( `coord_system_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -115,7 +116,7 @@ CREATE TABLE `coord_system` ( UNIQUE KEY `rank_idx` (`rank`,`species_id`), UNIQUE KEY `name_idx` (`name`,`version`,`species_id`), KEY `species_idx` (`species_id`) -) ENGINE=InnoDB AUTO_INCREMENT=4 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `data_file` ( `data_file_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -130,7 +131,7 @@ CREATE TABLE `data_file` ( UNIQUE KEY `df_unq_idx` (`coord_system_id`,`analysis_id`,`name`,`file_type`), KEY `df_name_idx` (`name`), KEY `df_analysis_idx` (`analysis_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `density_feature` ( `density_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -142,7 +143,7 @@ CREATE TABLE `density_feature` ( PRIMARY KEY (`density_feature_id`), KEY `seq_region_idx` (`density_type_id`,`seq_region_id`,`seq_region_start`), KEY `seq_region_id_idx` (`seq_region_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `density_type` ( `density_type_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -152,7 +153,7 @@ CREATE TABLE `density_type` ( `value_type` enum('sum','ratio') NOT NULL, PRIMARY KEY (`density_type_id`), UNIQUE KEY `analysis_idx` (`analysis_id`,`block_size`,`region_features`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `dependent_xref` ( `object_xref_id` int(10) unsigned NOT NULL, @@ -161,7 +162,7 @@ CREATE TABLE `dependent_xref` ( PRIMARY KEY (`object_xref_id`), KEY `dependent` (`dependent_xref_id`), KEY `master_idx` (`master_xref_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `ditag` ( `ditag_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -170,7 +171,7 @@ CREATE TABLE `ditag` ( `tag_count` smallint(6) unsigned NOT NULL DEFAULT '1', `sequence` tinytext NOT NULL, PRIMARY KEY (`ditag_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `ditag_feature` ( `ditag_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -190,13 +191,13 @@ CREATE TABLE `ditag_feature` ( KEY `ditag_idx` (`ditag_id`), KEY `ditag_pair_idx` (`ditag_pair_id`), KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`,`seq_region_end`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `dna` ( `seq_region_id` int(10) unsigned NOT NULL, `sequence` longtext NOT NULL, PRIMARY KEY (`seq_region_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1 MAX_ROWS=750000 AVG_ROW_LENGTH=19000; +) ENGINE=InnoDB MAX_ROWS=750000 AVG_ROW_LENGTH=19000; CREATE TABLE `dna_align_feature` ( `dna_align_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -222,7 +223,7 @@ CREATE TABLE `dna_align_feature` ( KEY `hit_idx` (`hit_name`), KEY `analysis_idx` (`analysis_id`), KEY `external_db_idx` (`external_db_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1 MAX_ROWS=100000000 AVG_ROW_LENGTH=80; +) ENGINE=InnoDB MAX_ROWS=100000000 AVG_ROW_LENGTH=80; CREATE TABLE `exon` ( `exon_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -241,7 +242,7 @@ CREATE TABLE `exon` ( PRIMARY KEY (`exon_id`), KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`), KEY `stable_id_idx` (`stable_id`,`version`) -) ENGINE=InnoDB AUTO_INCREMENT=6885 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `exon_transcript` ( `exon_id` int(10) unsigned NOT NULL, @@ -250,7 +251,7 @@ CREATE TABLE `exon_transcript` ( PRIMARY KEY (`exon_id`,`transcript_id`,`rank`), KEY `transcript` (`transcript_id`), KEY `exon` (`exon_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `external_db` ( `external_db_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -265,14 +266,14 @@ CREATE TABLE `external_db` ( `description` text, PRIMARY KEY (`external_db_id`), UNIQUE KEY `db_name_idx` (`db_name`,`db_release`) -) ENGINE=InnoDB AUTO_INCREMENT=50745 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `external_synonym` ( `xref_id` int(10) unsigned NOT NULL, `synonym` varchar(100) NOT NULL, PRIMARY KEY (`xref_id`,`synonym`), KEY `name_index` (`synonym`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `gene` ( `gene_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -298,7 +299,7 @@ CREATE TABLE `gene` ( KEY `analysis_idx` (`analysis_id`), KEY `stable_id_idx` (`stable_id`,`version`), KEY `canonical_transcript_id_idx` (`canonical_transcript_id`) -) ENGINE=InnoDB AUTO_INCREMENT=6885 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `gene_archive` ( `gene_stable_id` varchar(128) NOT NULL, @@ -313,7 +314,7 @@ CREATE TABLE `gene_archive` ( KEY `transcript_idx` (`transcript_stable_id`,`transcript_version`), KEY `translation_idx` (`translation_stable_id`,`translation_version`), KEY `peptide_archive_id_idx` (`peptide_archive_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `gene_attrib` ( `gene_id` int(10) unsigned NOT NULL DEFAULT '0', @@ -322,7 +323,7 @@ CREATE TABLE `gene_attrib` ( KEY `type_val_idx` (`attrib_type_id`,`value`(40)), KEY `val_only_idx` (`value`(40)), KEY `gene_idx` (`gene_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `identity_xref` ( `object_xref_id` int(10) unsigned NOT NULL, @@ -336,14 +337,14 @@ CREATE TABLE `identity_xref` ( `score` double DEFAULT NULL, `evalue` double DEFAULT NULL, PRIMARY KEY (`object_xref_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `interpro` ( `interpro_ac` varchar(40) NOT NULL, `id` varchar(40) NOT NULL, UNIQUE KEY `accession_idx` (`interpro_ac`,`id`), KEY `id_idx` (`id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `intron_supporting_evidence` ( `intron_supporting_evidence_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -359,7 +360,7 @@ CREATE TABLE `intron_supporting_evidence` ( PRIMARY KEY (`intron_supporting_evidence_id`), UNIQUE KEY `analysis_id` (`analysis_id`,`seq_region_id`,`seq_region_start`,`seq_region_end`,`seq_region_strand`,`hit_name`), KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `karyotype` ( `karyotype_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -370,13 +371,13 @@ CREATE TABLE `karyotype` ( `stain` varchar(40) NOT NULL, PRIMARY KEY (`karyotype_id`), KEY `region_band_idx` (`seq_region_id`,`band`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `map` ( `map_id` int(10) unsigned NOT NULL AUTO_INCREMENT, `map_name` varchar(30) NOT NULL, PRIMARY KEY (`map_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `mapping_session` ( `mapping_session_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -389,7 +390,7 @@ CREATE TABLE `mapping_session` ( `created` datetime NOT NULL, `species_id` int(10) NOT NULL, PRIMARY KEY (`mapping_session_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `mapping_set` ( `mapping_set_id` int(10) unsigned NOT NULL, @@ -397,7 +398,7 @@ CREATE TABLE `mapping_set` ( `external_schema_build` varchar(20) NOT NULL, PRIMARY KEY (`mapping_set_id`), UNIQUE KEY `mapping_idx` (`internal_schema_build`,`external_schema_build`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `marker` ( `marker_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -411,7 +412,7 @@ CREATE TABLE `marker` ( PRIMARY KEY (`marker_id`), KEY `marker_idx` (`marker_id`,`priority`), KEY `display_idx` (`display_marker_synonym_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `marker_feature` ( `marker_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -424,7 +425,7 @@ CREATE TABLE `marker_feature` ( PRIMARY KEY (`marker_feature_id`), KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`), KEY `analysis_idx` (`analysis_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `marker_map_location` ( `marker_id` int(10) unsigned NOT NULL, @@ -435,7 +436,7 @@ CREATE TABLE `marker_map_location` ( `lod_score` double DEFAULT NULL, PRIMARY KEY (`marker_id`,`map_id`), KEY `map_idx` (`map_id`,`chromosome_name`,`position`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `marker_synonym` ( `marker_synonym_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -445,7 +446,7 @@ CREATE TABLE `marker_synonym` ( PRIMARY KEY (`marker_synonym_id`), KEY `marker_synonym_idx` (`marker_synonym_id`,`name`), KEY `marker_idx` (`marker_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `meta` ( `meta_id` int(11) NOT NULL AUTO_INCREMENT, @@ -455,14 +456,14 @@ CREATE TABLE `meta` ( PRIMARY KEY (`meta_id`), UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`), KEY `species_value_idx` (`species_id`,`meta_value`) -) ENGINE=InnoDB AUTO_INCREMENT=67 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `meta_coord` ( `table_name` varchar(40) NOT NULL, `coord_system_id` int(10) unsigned NOT NULL, `max_length` int(11) DEFAULT NULL, UNIQUE KEY `cs_table_name_idx` (`coord_system_id`,`table_name`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `misc_attrib` ( `misc_feature_id` int(10) unsigned NOT NULL DEFAULT '0', @@ -471,7 +472,7 @@ CREATE TABLE `misc_attrib` ( KEY `type_val_idx` (`attrib_type_id`,`value`(40)), KEY `val_only_idx` (`value`(40)), KEY `misc_feature_idx` (`misc_feature_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `misc_feature` ( `misc_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -481,14 +482,14 @@ CREATE TABLE `misc_feature` ( `seq_region_strand` tinyint(4) NOT NULL DEFAULT '0', PRIMARY KEY (`misc_feature_id`), KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `misc_feature_misc_set` ( `misc_feature_id` int(10) unsigned NOT NULL DEFAULT '0', `misc_set_id` smallint(5) unsigned NOT NULL DEFAULT '0', PRIMARY KEY (`misc_feature_id`,`misc_set_id`), KEY `reverse_idx` (`misc_set_id`,`misc_feature_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `misc_set` ( `misc_set_id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, @@ -498,7 +499,7 @@ CREATE TABLE `misc_set` ( `max_length` int(10) unsigned NOT NULL, PRIMARY KEY (`misc_set_id`), UNIQUE KEY `code_idx` (`code`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `object_xref` ( `object_xref_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -511,7 +512,7 @@ CREATE TABLE `object_xref` ( UNIQUE KEY `xref_idx` (`xref_id`,`ensembl_object_type`,`ensembl_id`,`analysis_id`), KEY `ensembl_idx` (`ensembl_object_type`,`ensembl_id`), KEY `analysis_idx` (`analysis_id`) -) ENGINE=InnoDB AUTO_INCREMENT=81424 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `ontology_xref` ( `object_xref_id` int(10) unsigned NOT NULL DEFAULT '0', @@ -520,7 +521,7 @@ CREATE TABLE `ontology_xref` ( UNIQUE KEY `object_source_type_idx` (`object_xref_id`,`source_xref_id`,`linkage_type`), KEY `source_idx` (`source_xref_id`), KEY `object_idx` (`object_xref_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `operon` ( `operon_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -538,7 +539,7 @@ CREATE TABLE `operon` ( KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`), KEY `name_idx` (`display_label`), KEY `stable_id_idx` (`stable_id`,`version`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `operon_transcript` ( `operon_transcript_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -557,13 +558,13 @@ CREATE TABLE `operon_transcript` ( KEY `operon_idx` (`operon_id`), KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`), KEY `stable_id_idx` (`stable_id`,`version`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `operon_transcript_gene` ( `operon_transcript_id` int(10) unsigned DEFAULT NULL, `gene_id` int(10) unsigned DEFAULT NULL, KEY `operon_transcript_gene_idx` (`operon_transcript_id`,`gene_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `peptide_archive` ( `peptide_archive_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -571,7 +572,7 @@ CREATE TABLE `peptide_archive` ( `peptide_seq` mediumtext NOT NULL, PRIMARY KEY (`peptide_archive_id`), KEY `checksum` (`md5_checksum`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `prediction_exon` ( `prediction_exon_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -587,7 +588,7 @@ CREATE TABLE `prediction_exon` ( PRIMARY KEY (`prediction_exon_id`), KEY `transcript_idx` (`prediction_transcript_id`), KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `prediction_transcript` ( `prediction_transcript_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -600,7 +601,7 @@ CREATE TABLE `prediction_transcript` ( PRIMARY KEY (`prediction_transcript_id`), KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`), KEY `analysis_idx` (`analysis_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `protein_align_feature` ( `protein_align_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -624,7 +625,7 @@ CREATE TABLE `protein_align_feature` ( KEY `hit_idx` (`hit_name`), KEY `analysis_idx` (`analysis_id`), KEY `external_db_idx` (`external_db_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1 MAX_ROWS=100000000 AVG_ROW_LENGTH=80; +) ENGINE=InnoDB MAX_ROWS=100000000 AVG_ROW_LENGTH=80; CREATE TABLE `protein_feature` ( `protein_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -644,7 +645,7 @@ CREATE TABLE `protein_feature` ( KEY `translation_idx` (`translation_id`), KEY `hitname_idx` (`hit_name`), KEY `analysis_idx` (`analysis_id`) -) ENGINE=InnoDB AUTO_INCREMENT=24117 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `repeat_consensus` ( `repeat_consensus_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -657,7 +658,7 @@ CREATE TABLE `repeat_consensus` ( KEY `class` (`repeat_class`), KEY `consensus` (`repeat_consensus`(10)), KEY `type` (`repeat_type`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `repeat_feature` ( `repeat_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -674,7 +675,7 @@ CREATE TABLE `repeat_feature` ( KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`), KEY `repeat_idx` (`repeat_consensus_id`), KEY `analysis_idx` (`analysis_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1 MAX_ROWS=100000000 AVG_ROW_LENGTH=80; +) ENGINE=InnoDB MAX_ROWS=100000000 AVG_ROW_LENGTH=80; CREATE TABLE `seq_region` ( `seq_region_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -684,7 +685,7 @@ CREATE TABLE `seq_region` ( PRIMARY KEY (`seq_region_id`), UNIQUE KEY `name_cs_idx` (`name`,`coord_system_id`), KEY `cs_idx` (`coord_system_id`) -) ENGINE=InnoDB AUTO_INCREMENT=14 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `seq_region_attrib` ( `seq_region_id` int(10) unsigned NOT NULL DEFAULT '0', @@ -693,14 +694,14 @@ CREATE TABLE `seq_region_attrib` ( KEY `type_val_idx` (`attrib_type_id`,`value`(40)), KEY `val_only_idx` (`value`(40)), KEY `seq_region_idx` (`seq_region_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `seq_region_mapping` ( `external_seq_region_id` int(10) unsigned NOT NULL, `internal_seq_region_id` int(10) unsigned NOT NULL, `mapping_set_id` int(10) unsigned NOT NULL, KEY `mapping_set_idx` (`mapping_set_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `seq_region_synonym` ( `seq_region_synonym_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -710,7 +711,7 @@ CREATE TABLE `seq_region_synonym` ( PRIMARY KEY (`seq_region_synonym_id`), UNIQUE KEY `syn_idx` (`synonym`), KEY `seq_region_idx` (`seq_region_id`) -) ENGINE=InnoDB AUTO_INCREMENT=7 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `simple_feature` ( `simple_feature_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -725,7 +726,7 @@ CREATE TABLE `simple_feature` ( KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`), KEY `analysis_idx` (`analysis_id`), KEY `hit_idx` (`display_label`) -) ENGINE=InnoDB AUTO_INCREMENT=37 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `splicing_event` ( `splicing_event_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -739,7 +740,7 @@ CREATE TABLE `splicing_event` ( PRIMARY KEY (`splicing_event_id`), KEY `gene_idx` (`gene_id`), KEY `seq_region_idx` (`seq_region_id`,`seq_region_start`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `splicing_event_feature` ( `splicing_event_feature_id` int(10) unsigned NOT NULL, @@ -754,7 +755,7 @@ CREATE TABLE `splicing_event_feature` ( PRIMARY KEY (`splicing_event_feature_id`,`exon_id`,`transcript_id`), KEY `se_idx` (`splicing_event_id`), KEY `transcript_idx` (`transcript_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `splicing_transcript_pair` ( `splicing_transcript_pair_id` int(10) unsigned NOT NULL, @@ -763,7 +764,7 @@ CREATE TABLE `splicing_transcript_pair` ( `transcript_id_2` int(10) unsigned NOT NULL, PRIMARY KEY (`splicing_transcript_pair_id`), KEY `se_idx` (`splicing_event_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `stable_id_event` ( `old_stable_id` varchar(128) DEFAULT NULL, @@ -776,7 +777,7 @@ CREATE TABLE `stable_id_event` ( UNIQUE KEY `uni_idx` (`mapping_session_id`,`old_stable_id`,`new_stable_id`,`type`), KEY `new_idx` (`new_stable_id`), KEY `old_idx` (`old_stable_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `supporting_feature` ( `exon_id` int(10) unsigned NOT NULL DEFAULT '0', @@ -784,7 +785,7 @@ CREATE TABLE `supporting_feature` ( `feature_id` int(10) unsigned NOT NULL DEFAULT '0', UNIQUE KEY `all_idx` (`exon_id`,`feature_type`,`feature_id`), KEY `feature_idx` (`feature_type`,`feature_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1 MAX_ROWS=100000000 AVG_ROW_LENGTH=80; +) ENGINE=InnoDB MAX_ROWS=100000000 AVG_ROW_LENGTH=80; CREATE TABLE `transcript` ( `transcript_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -795,6 +796,7 @@ CREATE TABLE `transcript` ( `seq_region_end` int(10) unsigned NOT NULL, `seq_region_strand` tinyint(2) NOT NULL, `display_xref_id` int(10) unsigned DEFAULT NULL, + `source` varchar(20) NOT NULL, `biotype` varchar(40) NOT NULL, `status` enum('KNOWN','NOVEL','PUTATIVE','PREDICTED','KNOWN_BY_PROJECTION','UNKNOWN','ANNOTATED') DEFAULT NULL, `description` text, @@ -811,7 +813,7 @@ CREATE TABLE `transcript` ( KEY `xref_id_index` (`display_xref_id`), KEY `analysis_idx` (`analysis_id`), KEY `stable_id_idx` (`stable_id`,`version`) -) ENGINE=InnoDB AUTO_INCREMENT=6885 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `transcript_attrib` ( `transcript_id` int(10) unsigned NOT NULL DEFAULT '0', @@ -820,15 +822,16 @@ CREATE TABLE `transcript_attrib` ( KEY `type_val_idx` (`attrib_type_id`,`value`(40)), KEY `val_only_idx` (`value`(40)), KEY `transcript_idx` (`transcript_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `transcript_intron_supporting_evidence` ( `transcript_id` int(10) unsigned NOT NULL, `intron_supporting_evidence_id` int(10) unsigned NOT NULL, `previous_exon_id` int(10) unsigned NOT NULL, `next_exon_id` int(10) unsigned NOT NULL, - PRIMARY KEY (`intron_supporting_evidence_id`,`transcript_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; + PRIMARY KEY (`intron_supporting_evidence_id`,`transcript_id`), + KEY `transcript_idx` (`transcript_id`) +) ENGINE=InnoDB ; CREATE TABLE `transcript_supporting_feature` ( `transcript_id` int(10) unsigned NOT NULL DEFAULT '0', @@ -836,7 +839,7 @@ CREATE TABLE `transcript_supporting_feature` ( `feature_id` int(10) unsigned NOT NULL DEFAULT '0', UNIQUE KEY `all_idx` (`transcript_id`,`feature_type`,`feature_id`), KEY `feature_idx` (`feature_type`,`feature_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1 MAX_ROWS=100000000 AVG_ROW_LENGTH=80; +) ENGINE=InnoDB MAX_ROWS=100000000 AVG_ROW_LENGTH=80; CREATE TABLE `translation` ( `translation_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -852,7 +855,7 @@ CREATE TABLE `translation` ( PRIMARY KEY (`translation_id`), KEY `transcript_idx` (`transcript_id`), KEY `stable_id_idx` (`stable_id`,`version`) -) ENGINE=InnoDB AUTO_INCREMENT=6690 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `translation_attrib` ( `translation_id` int(10) unsigned NOT NULL DEFAULT '0', @@ -861,7 +864,7 @@ CREATE TABLE `translation_attrib` ( KEY `type_val_idx` (`attrib_type_id`,`value`(40)), KEY `val_only_idx` (`value`(40)), KEY `translation_idx` (`translation_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `unmapped_object` ( `unmapped_object_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -880,14 +883,14 @@ CREATE TABLE `unmapped_object` ( KEY `id_idx` (`identifier`(50)), KEY `anal_exdb_idx` (`analysis_id`,`external_db_id`), KEY `ext_db_identifier_idx` (`external_db_id`,`identifier`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `unmapped_reason` ( `unmapped_reason_id` smallint(5) unsigned NOT NULL AUTO_INCREMENT, `summary_description` varchar(255) DEFAULT NULL, `full_description` varchar(255) DEFAULT NULL, PRIMARY KEY (`unmapped_reason_id`) -) ENGINE=InnoDB DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; CREATE TABLE `xref` ( `xref_id` int(10) unsigned NOT NULL AUTO_INCREMENT, @@ -902,5 +905,5 @@ CREATE TABLE `xref` ( UNIQUE KEY `id_index` (`dbprimary_acc`,`external_db_id`,`info_type`,`info_text`,`version`), KEY `display_index` (`display_label`), KEY `info_type_idx` (`info_type`) -) ENGINE=InnoDB AUTO_INCREMENT=91703 DEFAULT CHARSET=latin1; +) ENGINE=InnoDB ; diff --git a/modules/t/test-genome-DBs/circ/core/transcript.txt b/modules/t/test-genome-DBs/circ/core/transcript.txt index b0e8d8f318e3dd58c4d1d9d3323e3537ebba18b4..a89a49372cf4363d04ba46476f6fb33209b8a497 100644 --- a/modules/t/test-genome-DBs/circ/core/transcript.txt +++ b/modules/t/test-genome-DBs/circ/core/transcript.txt @@ -1,259 +1,259 @@ -6626 6626 21 3 700 2754 -1 88461 protein_coding ANNOTATED \N 1 6463 AFQ30217 1 2013-07-16 13:03:32 2013-07-16 13:03:32 -6627 6627 21 3 2758 4539 -1 88470 protein_coding ANNOTATED \N 1 6464 AFQ30218 1 2013-07-16 13:03:51 2013-07-16 13:03:51 -6628 6628 21 3 4552 5766 -1 88478 protein_coding ANNOTATED \N 1 6465 AFQ30219 1 2013-07-16 13:03:57 2013-07-16 13:03:57 -6629 6629 21 3 5781 6728 -1 88486 protein_coding ANNOTATED \N 1 6466 AFQ30220 1 2013-07-16 13:03:17 2013-07-16 13:03:17 -6630 6630 21 3 6744 7493 -1 88494 protein_coding ANNOTATED \N 1 6467 AFQ30221 1 2013-07-16 13:03:24 2013-07-16 13:03:24 -6631 6631 21 3 7496 7870 -1 88502 protein_coding ANNOTATED \N 1 6468 AFQ30222 1 2013-07-16 13:03:25 2013-07-16 13:03:25 -6632 6632 21 3 7968 8195 -1 88510 protein_coding ANNOTATED \N 1 6469 AFQ30223 1 2013-07-16 13:04:10 2013-07-16 13:04:10 -6633 6633 21 3 8271 8933 -1 88519 protein_coding ANNOTATED \N 1 6470 AFQ30224 1 2013-07-16 13:04:09 2013-07-16 13:04:09 -6634 6634 21 3 230089 230622 1 88527 protein_coding ANNOTATED \N 1 6471 AFQ30448 1 2013-07-16 13:03:54 2013-07-16 13:03:54 -6635 6635 21 3 230700 230885 1 88535 protein_coding ANNOTATED \N 1 6472 AFQ30449 1 2013-07-16 13:03:16 2013-07-16 13:03:16 -6636 6636 21 3 230948 231418 1 88543 protein_coding ANNOTATED \N 1 6473 AFQ30450 1 2013-07-16 13:03:37 2013-07-16 13:03:37 -6637 6637 21 3 231603 231902 1 88551 protein_coding ANNOTATED \N 1 6474 AFQ30451 1 2013-07-16 13:04:15 2013-07-16 13:04:15 -6638 6638 21 3 232697 232912 1 88559 protein_coding ANNOTATED \N 1 6475 AFQ30452 1 2013-07-16 13:03:31 2013-07-16 13:03:31 -6639 6639 21 3 232927 233595 -1 88567 protein_coding ANNOTATED \N 1 6476 AFQ30453 1 2013-07-16 13:04:11 2013-07-16 13:04:11 -6640 6640 21 3 233785 233991 1 88575 protein_coding ANNOTATED \N 1 6477 AFQ30454 1 2013-07-16 13:03:49 2013-07-16 13:03:49 -6641 6641 21 3 234076 235323 -1 88583 protein_coding ANNOTATED \N 1 6478 AFQ30455 1 2013-07-16 13:03:34 2013-07-16 13:03:34 -6642 6642 21 3 235337 685 -1 88591 protein_coding ANNOTATED \N 1 6479 AFQ30216 1 2013-07-16 13:03:58 2013-07-16 13:03:58 -6643 6643 21 3 150202 151044 1 88607 protein_coding ANNOTATED \N 1 6480 AFQ30343 1 2013-07-16 13:03:44 2013-07-16 13:03:44 -6644 6644 21 3 151325 153892 1 88615 protein_coding ANNOTATED \N 1 6481 AFQ30344 1 2013-07-16 13:04:07 2013-07-16 13:04:07 -6645 6645 21 3 153966 154949 1 88630 protein_coding ANNOTATED \N 1 6482 AFQ30345 1 2013-07-16 13:04:11 2013-07-16 13:04:11 -6646 6646 28 3 155169 155243 1 88632 tRNA ANNOTATED \N 1 \N BTF1_t31789 1 2013-07-16 13:04:17 2013-07-16 13:04:17 -6647 6647 28 3 155250 155329 1 88635 tRNA ANNOTATED \N 1 \N BTF1_t31791 1 2013-07-16 13:04:16 2013-07-16 13:04:16 -6648 6648 28 3 155338 155425 1 88638 tRNA ANNOTATED \N 1 \N BTF1_t31793 1 2013-07-16 13:04:17 2013-07-16 13:04:17 -6649 6649 28 3 155623 155697 1 88641 tRNA ANNOTATED \N 1 \N BTF1_t31795 1 2013-07-16 13:04:17 2013-07-16 13:04:17 -6650 6650 28 3 155704 155775 1 88644 tRNA ANNOTATED \N 1 \N BTF1_t31797 1 2013-07-16 13:04:18 2013-07-16 13:04:18 -6651 6651 28 3 155782 155854 1 88647 tRNA ANNOTATED \N 1 \N BTF1_t31799 1 2013-07-16 13:04:18 2013-07-16 13:04:18 -6652 6652 28 3 156057 156133 1 88650 tRNA ANNOTATED \N 1 \N BTF1_t31801 1 2013-07-16 13:04:17 2013-07-16 13:04:17 -6653 6653 28 3 156290 156363 1 88653 tRNA ANNOTATED \N 1 \N BTF1_t31803 1 2013-07-16 13:04:17 2013-07-16 13:04:17 -6654 6654 28 3 156374 156448 1 88656 tRNA ANNOTATED \N 1 \N BTF1_t31805 1 2013-07-16 13:04:17 2013-07-16 13:04:17 -6655 6655 28 3 156548 156621 1 88659 tRNA ANNOTATED \N 1 \N BTF1_t31807 1 2013-07-16 13:04:16 2013-07-16 13:04:16 -6656 6656 28 3 156632 156705 1 88662 tRNA ANNOTATED \N 1 \N BTF1_t31809 1 2013-07-16 13:04:17 2013-07-16 13:04:17 -6657 6657 28 3 156735 156807 1 88665 tRNA ANNOTATED \N 1 \N BTF1_t31811 1 2013-07-16 13:04:17 2013-07-16 13:04:17 -6658 6658 21 3 156856 157386 1 88674 protein_coding ANNOTATED \N 1 6483 AFQ30346 1 2013-07-16 13:03:59 2013-07-16 13:03:59 -6659 6659 28 3 157418 157494 1 88676 tRNA ANNOTATED \N 1 \N BTF1_t31813 1 2013-07-16 13:04:17 2013-07-16 13:04:17 -6660 6660 28 3 157503 157575 1 88679 tRNA ANNOTATED \N 1 \N BTF1_t31815 1 2013-07-16 13:04:17 2013-07-16 13:04:17 -6661 6661 28 3 157852 157935 1 88682 tRNA ANNOTATED \N 1 \N BTF1_t31817 1 2013-07-16 13:04:17 2013-07-16 13:04:17 -6662 6662 28 3 157939 158012 1 88685 tRNA ANNOTATED \N 1 \N BTF1_t31819 1 2013-07-16 13:04:18 2013-07-16 13:04:18 -6663 6663 28 3 158104 158192 1 88688 tRNA ANNOTATED \N 1 \N BTF1_t31821 1 2013-07-16 13:04:16 2013-07-16 13:04:16 -6664 6664 21 3 158412 158852 1 88697 protein_coding ANNOTATED \N 1 6484 AFQ30347 1 2013-07-16 13:04:12 2013-07-16 13:04:12 -6665 6665 21 3 158878 159462 1 88715 protein_coding ANNOTATED \N 1 6485 AFQ30348 1 2013-07-16 13:03:39 2013-07-16 13:03:39 -6666 6666 21 3 159476 159976 1 88723 protein_coding ANNOTATED \N 1 6486 AFQ30349 1 2013-07-16 13:03:17 2013-07-16 13:03:17 -6667 6667 21 3 159997 160533 1 88739 protein_coding ANNOTATED \N 1 6487 AFQ30350 1 2013-07-16 13:03:43 2013-07-16 13:03:43 -6668 6668 21 4 210132 210989 1 88747 protein_coding ANNOTATED \N 1 6488 AFQ30645 1 2013-07-16 13:04:34 2013-07-16 13:04:34 -6669 6669 21 4 211116 212180 1 88755 protein_coding ANNOTATED \N 1 6489 AFQ30646 1 2013-07-16 13:04:43 2013-07-16 13:04:43 -6670 6670 21 4 212807 213178 1 88763 protein_coding ANNOTATED \N 1 6490 AFQ30647 1 2013-07-16 13:04:52 2013-07-16 13:04:52 -6671 6671 21 4 213615 213926 1 88772 protein_coding ANNOTATED \N 1 6491 AFQ30648 1 2013-07-16 13:04:34 2013-07-16 13:04:34 -6672 6672 21 4 213957 214370 1 88786 protein_coding ANNOTATED \N 1 6492 AFQ30649 1 2013-07-16 13:05:04 2013-07-16 13:05:04 -6673 6673 21 4 215358 215726 1 88795 protein_coding ANNOTATED \N 1 6493 AFQ30650 1 2013-07-16 13:04:44 2013-07-16 13:04:44 -6674 6674 21 4 215708 216049 1 88803 protein_coding ANNOTATED \N 1 6494 AFQ30651 1 2013-07-16 13:04:33 2013-07-16 13:04:33 -6675 6675 21 4 216280 217335 1 88812 protein_coding ANNOTATED \N 1 6495 AFQ30652 1 2013-07-16 13:05:02 2013-07-16 13:05:02 -6676 6676 21 4 217755 218327 1 88820 protein_coding ANNOTATED \N 1 6496 AFQ30653 1 2013-07-16 13:05:03 2013-07-16 13:05:03 -6677 6677 21 4 218689 219771 1 88835 protein_coding ANNOTATED \N 1 6497 AFQ30654 1 2013-07-16 13:05:05 2013-07-16 13:05:05 -6678 6678 21 4 220171 220830 -1 88850 protein_coding ANNOTATED \N 1 6498 AFQ30655 1 2013-07-16 13:04:36 2013-07-16 13:04:36 -6679 6679 21 4 221204 221416 1 88858 protein_coding ANNOTATED \N 1 6499 AFQ30656 1 2013-07-16 13:04:24 2013-07-16 13:04:24 -6680 6680 21 4 221988 222215 1 88876 protein_coding ANNOTATED \N 1 6500 AFQ30657 1 2013-07-16 13:04:46 2013-07-16 13:04:46 -6681 6681 21 4 222287 432 1 88891 protein_coding ANNOTATED \N 1 6501 AFQ30658 1 2013-07-16 13:04:21 2013-07-16 13:04:21 -6682 6682 21 4 572 1483 -1 88901 protein_coding ANNOTATED \N 1 6502 AFQ30456 1 2013-07-16 13:04:22 2013-07-16 13:04:22 -6683 6683 21 4 1640 2599 -1 88912 protein_coding ANNOTATED \N 1 6503 AFQ30457 1 2013-07-16 13:04:31 2013-07-16 13:04:31 -6684 6684 21 4 2873 3121 1 88920 protein_coding ANNOTATED \N 1 6504 AFQ30458 1 2013-07-16 13:04:43 2013-07-16 13:04:43 -6685 6685 21 4 3135 3731 1 88935 protein_coding ANNOTATED \N 1 6505 AFQ30459 1 2013-07-16 13:04:43 2013-07-16 13:04:43 -6686 6686 21 4 3847 4158 -1 88944 protein_coding ANNOTATED \N 1 6506 AFQ30460 1 2013-07-16 13:05:02 2013-07-16 13:05:02 -6687 6687 21 4 4626 5060 -1 88952 protein_coding ANNOTATED \N 1 6507 AFQ30461 1 2013-07-16 13:04:38 2013-07-16 13:04:38 -6688 6688 21 4 5444 6019 -1 88960 protein_coding ANNOTATED \N 1 6508 AFQ30462 1 2013-07-16 13:04:53 2013-07-16 13:04:53 -6689 6689 21 4 7087 8286 -1 88976 protein_coding ANNOTATED \N 1 6509 AFQ30463 1 2013-07-16 13:04:41 2013-07-16 13:04:41 -6690 6690 21 4 8316 8516 -1 88984 protein_coding ANNOTATED \N 1 6510 AFQ30464 1 2013-07-16 13:05:05 2013-07-16 13:05:05 -6691 6691 21 4 8683 8943 -1 88992 protein_coding ANNOTATED \N 1 6511 AFQ30465 1 2013-07-16 13:05:01 2013-07-16 13:05:01 -6692 6692 21 4 9011 10948 -1 89000 protein_coding ANNOTATED \N 1 6512 AFQ30466 1 2013-07-16 13:04:45 2013-07-16 13:04:45 -6693 6693 21 7 347058 347492 -1 89008 protein_coding ANNOTATED \N 1 6513 AFQ30213 1 2013-07-16 13:05:41 2013-07-16 13:05:41 -6694 6694 21 7 347641 348741 -1 89016 protein_coding ANNOTATED \N 1 6514 AFQ30214 1 2013-07-16 13:06:06 2013-07-16 13:06:06 -6695 6695 21 7 348754 349407 -1 89024 protein_coding ANNOTATED \N 1 6515 AFQ30215 1 2013-07-16 13:06:29 2013-07-16 13:06:29 -6696 6696 21 7 349459 333 -1 89032 protein_coding ANNOTATED \N 1 6516 AFQ29782 1 2013-07-16 13:06:14 2013-07-16 13:06:14 -6697 6697 21 7 453 1598 -1 89040 protein_coding ANNOTATED \N 1 6517 AFQ29783 1 2013-07-16 13:06:04 2013-07-16 13:06:04 -6698 6698 21 7 1612 1947 -1 89048 protein_coding ANNOTATED \N 1 6518 AFQ29784 1 2013-07-16 13:05:49 2013-07-16 13:05:49 -6699 6699 21 7 2425 2937 -1 89056 protein_coding ANNOTATED \N 1 6519 AFQ29785 1 2013-07-16 13:05:26 2013-07-16 13:05:26 -6700 6700 21 7 2957 3427 -1 89064 protein_coding ANNOTATED \N 1 6520 AFQ29786 1 2013-07-16 13:05:35 2013-07-16 13:05:35 -6701 6701 21 7 3458 3892 -1 89072 protein_coding ANNOTATED \N 1 6521 AFQ29787 1 2013-07-16 13:05:15 2013-07-16 13:05:15 -6702 6702 21 7 4042 4494 -1 89080 protein_coding ANNOTATED \N 1 6522 AFQ29788 1 2013-07-16 13:05:33 2013-07-16 13:05:33 -6703 6703 21 7 4528 4965 -1 89088 protein_coding ANNOTATED \N 1 6523 AFQ29789 1 2013-07-16 13:05:38 2013-07-16 13:05:38 -6704 6704 21 11 5300113 5300397 1 89096 protein_coding ANNOTATED \N 1 6524 AFQ29625 1 2013-07-16 13:09:18 2013-07-16 13:09:18 -6705 6705 21 11 5300922 5301548 1 89104 protein_coding ANNOTATED \N 1 6525 AFQ29626 1 2013-07-16 13:31:48 2013-07-16 13:31:48 -6706 6706 21 11 5301578 5302180 1 89118 protein_coding ANNOTATED \N 1 6526 AFQ29627 1 2013-07-16 13:25:20 2013-07-16 13:25:20 -6707 6707 21 11 5302408 5303115 1 89126 protein_coding ANNOTATED \N 1 6527 AFQ29628 1 2013-07-16 13:12:50 2013-07-16 13:12:50 -6708 6708 21 11 5303151 5304335 1 89140 protein_coding ANNOTATED \N 1 6528 AFQ29629 1 2013-07-16 13:15:34 2013-07-16 13:15:34 -6709 6709 21 11 5304508 5305038 -1 89149 protein_coding ANNOTATED \N 1 6529 AFQ29630 1 2013-07-16 13:36:54 2013-07-16 13:36:54 -6710 6710 21 11 5305053 5306660 -1 89163 protein_coding ANNOTATED \N 1 6530 AFQ29631 1 2013-07-16 13:29:49 2013-07-16 13:29:49 -6711 6711 21 11 5306860 5307246 1 89172 protein_coding ANNOTATED \N 1 6531 AFQ29632 1 2013-07-16 13:24:02 2013-07-16 13:24:02 -6712 6712 21 11 5308066 5309604 1 89202 protein_coding ANNOTATED \N 1 6532 AFQ29633 1 2013-07-16 13:09:04 2013-07-16 13:09:04 -6713 6713 21 11 5309909 5310424 1 89210 protein_coding ANNOTATED \N 1 6533 AFQ29634 1 2013-07-16 13:30:56 2013-07-16 13:30:56 -6714 6714 21 11 5310421 5311137 1 89218 protein_coding ANNOTATED \N 1 6534 AFQ29635 1 2013-07-16 13:26:15 2013-07-16 13:26:15 -6715 6715 21 11 5311140 5312159 1 89226 protein_coding ANNOTATED \N 1 6535 AFQ29636 1 2013-07-16 13:07:13 2013-07-16 13:07:13 -6716 6716 21 11 5312477 5312884 1 89234 protein_coding ANNOTATED \N 1 6536 AFQ29637 1 2013-07-16 13:40:17 2013-07-16 13:40:17 -6717 6717 21 11 5313273 5313545 1 89242 protein_coding ANNOTATED \N 1 6537 AFQ29638 1 2013-07-16 13:37:40 2013-07-16 13:37:40 -6718 6718 21 11 5313814 5315220 1 89265 protein_coding ANNOTATED \N 1 6538 AFQ29639 1 2013-07-16 13:39:16 2013-07-16 13:39:16 -6719 6719 21 11 5315514 5316017 1 89273 protein_coding ANNOTATED \N 1 6539 AFQ29640 1 2013-07-16 13:14:28 2013-07-16 13:14:28 -6720 6720 21 11 5315998 5317026 1 89289 protein_coding ANNOTATED \N 1 6540 AFQ29641 1 2013-07-16 13:08:35 2013-07-16 13:08:35 -6721 6721 21 11 5317047 5317253 1 89298 protein_coding ANNOTATED \N 1 6541 AFQ29642 1 2013-07-16 13:38:43 2013-07-16 13:38:43 -6722 6722 21 11 5317250 5318503 1 89317 protein_coding ANNOTATED \N 1 6542 AFQ29643 1 2013-07-16 13:29:35 2013-07-16 13:29:35 -6723 6723 21 11 5318504 5319310 1 89330 protein_coding ANNOTATED \N 1 6543 AFQ29644 1 2013-07-16 13:09:02 2013-07-16 13:09:02 -6724 6724 21 11 5319297 5319689 1 89338 protein_coding ANNOTATED \N 1 6544 AFQ29645 1 2013-07-16 13:42:07 2013-07-16 13:42:07 -6725 6725 21 11 5320179 5321504 1 89355 protein_coding ANNOTATED \N 1 6545 AFQ29646 1 2013-07-16 13:12:33 2013-07-16 13:12:33 -6726 6726 21 11 5321798 5322499 1 89376 protein_coding ANNOTATED \N 1 6546 AFQ29647 1 2013-07-16 13:43:11 2013-07-16 13:43:11 -6727 6727 21 11 5322483 5323988 1 89399 protein_coding ANNOTATED \N 1 6547 AFQ29648 1 2013-07-16 13:23:41 2013-07-16 13:23:41 -6728 6728 28 11 5324281 5325843 1 89401 rRNA ANNOTATED \N 1 \N BTF1_r28371 1 2013-07-16 13:44:01 2013-07-16 13:44:01 -6729 6729 28 11 5325982 5328906 1 89404 rRNA ANNOTATED \N 1 \N BTF1_r28399 1 2013-07-16 13:43:58 2013-07-16 13:43:58 -6730 6730 28 11 5328953 5329068 1 89407 rRNA ANNOTATED \N 1 \N BTF1_r28343 1 2013-07-16 13:44:00 2013-07-16 13:44:00 -6731 6731 21 11 5329301 5330260 1 89420 protein_coding ANNOTATED \N 1 6548 AFQ29649 1 2013-07-16 13:36:53 2013-07-16 13:36:53 -6732 6732 21 11 5330461 5331192 1 89433 protein_coding ANNOTATED \N 1 6549 AFQ29650 1 2013-07-16 13:38:09 2013-07-16 13:38:09 -6733 6733 28 11 5331540 5333102 1 89435 rRNA ANNOTATED \N 1 \N BTF1_r28373 1 2013-07-16 13:43:54 2013-07-16 13:43:54 -6734 6734 28 11 5333241 5336165 1 89438 rRNA ANNOTATED \N 1 \N BTF1_r28401 1 2013-07-16 13:43:54 2013-07-16 13:43:54 -6735 6735 28 11 5336211 5336326 1 89441 rRNA ANNOTATED \N 1 \N BTF1_r28345 1 2013-07-16 13:43:59 2013-07-16 13:43:59 -6736 6736 21 11 5336495 5336923 -1 89459 protein_coding ANNOTATED \N 1 6550 AFQ29651 1 2013-07-16 13:15:40 2013-07-16 13:15:40 -6737 6737 28 11 5339054 5340616 1 89461 rRNA ANNOTATED \N 1 \N BTF1_r28375 1 2013-07-16 13:43:55 2013-07-16 13:43:55 -6738 6738 28 11 5340755 5343679 1 89464 rRNA ANNOTATED \N 1 \N BTF1_r28403 1 2013-07-16 13:43:53 2013-07-16 13:43:53 -6739 6739 28 11 5343725 5343840 1 89467 rRNA ANNOTATED \N 1 \N BTF1_r28347 1 2013-07-16 13:43:57 2013-07-16 13:43:57 -6740 6740 21 11 5343916 5344374 -1 89479 protein_coding ANNOTATED \N 1 6551 AFQ29652 1 2013-07-16 13:15:03 2013-07-16 13:15:03 -6741 6741 21 11 5344731 5345528 -1 89503 protein_coding ANNOTATED \N 1 6552 AFQ29653 1 2013-07-16 13:29:26 2013-07-16 13:29:26 -6742 6742 21 11 5345546 5346283 -1 89511 protein_coding ANNOTATED \N 1 6553 AFQ29654 1 2013-07-16 13:34:14 2013-07-16 13:34:14 -6743 6743 21 11 5346276 5347205 -1 89530 protein_coding ANNOTATED \N 1 6554 AFQ29655 1 2013-07-16 13:27:09 2013-07-16 13:27:09 -6744 6744 21 11 5347274 5348287 -1 89554 protein_coding ANNOTATED \N 1 6555 AFQ29656 1 2013-07-16 13:20:05 2013-07-16 13:20:05 -6745 6745 21 11 5348277 5348990 -1 89575 protein_coding ANNOTATED \N 1 6556 AFQ29657 1 2013-07-16 13:33:30 2013-07-16 13:33:30 -6746 6746 28 11 5349468 5351030 1 89577 rRNA ANNOTATED \N 1 \N BTF1_r28377 1 2013-07-16 13:43:53 2013-07-16 13:43:53 -6747 6747 28 11 5351169 5354093 1 89580 rRNA ANNOTATED \N 1 \N BTF1_r28405 1 2013-07-16 13:43:54 2013-07-16 13:43:54 -6748 6748 28 11 5354139 5354254 1 89583 rRNA ANNOTATED \N 1 \N BTF1_r28349 1 2013-07-16 13:43:58 2013-07-16 13:43:58 -6749 6749 21 11 5354467 5355387 1 89596 protein_coding ANNOTATED \N 1 6557 AFQ29658 1 2013-07-16 13:23:57 2013-07-16 13:23:57 -6750 6750 21 11 5355474 5356265 -1 89610 protein_coding ANNOTATED \N 1 6558 AFQ29659 1 2013-07-16 13:21:59 2013-07-16 13:21:59 -6751 6751 28 11 5356579 5358141 1 89612 rRNA ANNOTATED \N 1 \N BTF1_r28379 1 2013-07-16 13:43:53 2013-07-16 13:43:53 -6752 6752 28 11 5358280 5361204 1 89615 rRNA ANNOTATED \N 1 \N BTF1_r28407 1 2013-07-16 13:43:53 2013-07-16 13:43:53 -6753 6753 28 11 5361251 5361366 1 89618 rRNA ANNOTATED \N 1 \N BTF1_r28351 1 2013-07-16 13:43:55 2013-07-16 13:43:55 -6754 6754 21 11 5362106 5362591 1 89634 protein_coding ANNOTATED \N 1 6559 AFQ29660 1 2013-07-16 13:12:36 2013-07-16 13:12:36 -6755 6755 21 11 5362588 5363739 1 89663 protein_coding ANNOTATED \N 1 6560 AFQ29661 1 2013-07-16 13:07:35 2013-07-16 13:07:35 -6756 6756 21 11 5363736 5365043 1 89686 protein_coding ANNOTATED \N 1 6561 AFQ29662 1 2013-07-16 13:17:58 2013-07-16 13:17:58 -6757 6757 21 11 5365132 5365851 1 89704 protein_coding ANNOTATED \N 1 6562 AFQ29663 1 2013-07-16 13:14:58 2013-07-16 13:14:58 -6758 6758 21 11 5365844 5366098 1 89716 protein_coding ANNOTATED \N 1 6563 AFQ29664 1 2013-07-16 13:12:48 2013-07-16 13:12:48 -6759 6759 21 11 5366095 5366778 1 89737 protein_coding ANNOTATED \N 1 6564 AFQ29665 1 2013-07-16 13:20:46 2013-07-16 13:20:46 -6760 6760 21 11 5366762 5368981 1 89758 protein_coding ANNOTATED \N 1 6565 AFQ29666 1 2013-07-16 13:29:17 2013-07-16 13:29:17 -6761 6761 21 11 5368966 5370381 1 89781 protein_coding ANNOTATED \N 1 6566 AFQ29667 1 2013-07-16 13:10:58 2013-07-16 13:10:58 -6762 6762 21 11 5370487 5371527 1 89802 protein_coding ANNOTATED \N 1 6567 AFQ29668 1 2013-07-16 13:36:20 2013-07-16 13:36:20 -6763 6763 21 11 5371524 5372111 1 89822 protein_coding ANNOTATED \N 1 6568 AFQ29669 1 2013-07-16 13:23:37 2013-07-16 13:23:37 -6764 6764 21 11 5372136 5373671 1 89841 protein_coding ANNOTATED \N 1 6569 AFQ29670 1 2013-07-16 13:40:41 2013-07-16 13:40:41 -6765 6765 21 11 5374051 5375322 1 89872 protein_coding ANNOTATED \N 1 6570 AFQ29671 1 2013-07-16 13:22:35 2013-07-16 13:22:35 -6766 6766 21 11 5375359 5375523 -1 89886 protein_coding ANNOTATED \N 1 6571 AFQ29672 1 2013-07-16 13:41:32 2013-07-16 13:41:32 -6767 6767 21 11 5375539 5376384 -1 89899 protein_coding ANNOTATED \N 1 6572 AFQ29673 1 2013-07-16 13:27:17 2013-07-16 13:27:17 -6768 6768 21 11 5376603 5376980 -1 89908 protein_coding ANNOTATED \N 1 6573 AFQ29674 1 2013-07-16 13:42:21 2013-07-16 13:42:21 -6769 6769 21 11 5377262 5377951 1 89924 protein_coding ANNOTATED \N 1 6574 AFQ29675 1 2013-07-16 13:41:32 2013-07-16 13:41:32 -6770 6770 21 11 5377952 5380213 1 89949 protein_coding ANNOTATED \N 1 6575 AFQ29676 1 2013-07-16 13:30:44 2013-07-16 13:30:44 -6771 6771 21 11 5380228 5382237 1 89978 protein_coding ANNOTATED \N 1 6576 AFQ29677 1 2013-07-16 13:16:58 2013-07-16 13:16:58 -6772 6772 21 11 5382254 5383447 1 89987 protein_coding ANNOTATED \N 1 6577 AFQ29678 1 2013-07-16 13:26:19 2013-07-16 13:26:19 -6773 6773 21 11 5383544 5384314 1 89999 protein_coding ANNOTATED \N 1 6578 AFQ29679 1 2013-07-16 13:34:50 2013-07-16 13:34:50 -6774 6774 21 11 5384468 5386015 1 90024 protein_coding ANNOTATED \N 1 6579 AFQ29680 1 2013-07-16 13:22:13 2013-07-16 13:22:13 -6775 6775 21 11 5386286 5386831 -1 90036 protein_coding ANNOTATED \N 1 6580 AFQ29681 1 2013-07-16 13:38:42 2013-07-16 13:38:42 -6776 6776 21 11 5387304 5388323 1 90062 protein_coding ANNOTATED \N 1 6581 AFQ29682 1 2013-07-16 13:25:57 2013-07-16 13:25:57 -6777 6777 21 11 5388313 5388978 1 90078 protein_coding ANNOTATED \N 1 6582 AFQ29683 1 2013-07-16 13:08:07 2013-07-16 13:08:07 -6778 6778 21 11 5389000 5389854 1 90087 protein_coding ANNOTATED \N 1 6583 AFQ29684 1 2013-07-16 13:22:04 2013-07-16 13:22:04 -6779 6779 21 11 5390022 5390492 -1 90096 protein_coding ANNOTATED \N 1 6584 AFQ29685 1 2013-07-16 13:25:05 2013-07-16 13:25:05 -6780 6780 21 11 5390551 5390742 -1 90105 protein_coding ANNOTATED \N 1 6585 AFQ29686 1 2013-07-16 13:06:45 2013-07-16 13:06:45 -6781 6781 21 11 5390735 5391913 -1 90123 protein_coding ANNOTATED \N 1 6586 AFQ29687 1 2013-07-16 13:27:19 2013-07-16 13:27:19 -6782 6782 21 11 5391992 5392474 -1 90142 protein_coding ANNOTATED \N 1 6587 AFQ29688 1 2013-07-16 13:07:33 2013-07-16 13:07:33 -6783 6783 21 11 5392706 5392942 1 90151 protein_coding ANNOTATED \N 1 6588 AFQ29689 1 2013-07-16 13:23:54 2013-07-16 13:23:54 -6784 6784 21 11 5393084 5393374 1 90171 protein_coding ANNOTATED \N 1 6589 AFQ29690 1 2013-07-16 13:30:18 2013-07-16 13:30:18 -6785 6785 21 11 5393390 5394847 1 90192 protein_coding ANNOTATED \N 1 6590 AFQ29691 1 2013-07-16 13:37:11 2013-07-16 13:37:11 -6786 6786 21 11 5394862 5396289 1 90215 protein_coding ANNOTATED \N 1 6591 AFQ29692 1 2013-07-16 13:41:02 2013-07-16 13:41:02 -6787 6787 21 11 5396850 5397755 1 90233 protein_coding ANNOTATED \N 1 6592 AFQ29693 1 2013-07-16 13:28:06 2013-07-16 13:28:06 -6788 6788 21 11 5397896 5398642 1 90246 protein_coding ANNOTATED \N 1 6593 AFQ29694 1 2013-07-16 13:22:11 2013-07-16 13:22:11 -6789 6789 21 11 5398797 5400161 1 90266 protein_coding ANNOTATED \N 1 6594 AFQ29695 1 2013-07-16 13:20:01 2013-07-16 13:20:01 -6790 6790 21 11 5400277 5401644 1 90298 protein_coding ANNOTATED \N 1 6595 AFQ29696 1 2013-07-16 13:22:46 2013-07-16 13:22:46 -6791 6791 21 11 5401637 5403088 1 90317 protein_coding ANNOTATED \N 1 6596 AFQ29697 1 2013-07-16 13:14:19 2013-07-16 13:14:19 -6792 6792 21 11 5403136 5403459 1 90333 protein_coding ANNOTATED \N 1 6597 AFQ29698 1 2013-07-16 13:39:21 2013-07-16 13:39:21 -6793 6793 21 11 5403592 5404083 1 90345 protein_coding ANNOTATED \N 1 6598 AFQ29699 1 2013-07-16 13:09:08 2013-07-16 13:09:08 -6794 6794 21 11 5404128 5405357 -1 90359 protein_coding ANNOTATED \N 1 6599 AFQ29700 1 2013-07-16 13:26:05 2013-07-16 13:26:05 -6795 6795 21 11 5405474 5406556 -1 90375 protein_coding ANNOTATED \N 1 6600 AFQ29701 1 2013-07-16 13:41:01 2013-07-16 13:41:01 -6796 6796 21 11 5406704 5406877 -1 90383 protein_coding ANNOTATED \N 1 6601 AFQ29702 1 2013-07-16 13:35:08 2013-07-16 13:35:08 -6797 6797 21 11 5407094 5407801 1 90391 protein_coding ANNOTATED \N 1 6602 AFQ29703 1 2013-07-16 13:20:00 2013-07-16 13:20:00 -6798 6798 21 11 5407848 5409044 -1 90410 protein_coding ANNOTATED \N 1 6603 AFQ29704 1 2013-07-16 13:41:35 2013-07-16 13:41:35 -6799 6799 21 11 5409470 5410846 1 90432 protein_coding ANNOTATED \N 1 6604 AFQ29705 1 2013-07-16 13:36:03 2013-07-16 13:36:03 -6800 6800 21 11 5411007 5411996 1 90451 protein_coding ANNOTATED \N 1 6605 AFQ29706 1 2013-07-16 13:34:39 2013-07-16 13:34:39 -6801 6801 21 11 5412348 5412866 1 90460 protein_coding ANNOTATED \N 1 6606 AFQ29707 1 2013-07-16 13:08:22 2013-07-16 13:08:22 -6802 6802 21 11 5412961 5413668 1 90474 protein_coding ANNOTATED \N 1 6607 AFQ29708 1 2013-07-16 13:35:51 2013-07-16 13:35:51 -6803 6803 21 11 5413665 5413856 -1 90482 protein_coding ANNOTATED \N 1 6608 AFQ29709 1 2013-07-16 13:22:27 2013-07-16 13:22:27 -6804 6804 21 11 5413888 5414583 -1 90495 protein_coding ANNOTATED \N 1 6609 AFQ29710 1 2013-07-16 13:24:02 2013-07-16 13:24:02 -6805 6805 21 11 5414598 5415707 -1 90509 protein_coding ANNOTATED \N 1 6610 AFQ29711 1 2013-07-16 13:25:27 2013-07-16 13:25:27 -6806 6806 21 11 5415801 5417072 1 90517 protein_coding ANNOTATED \N 1 6611 AFQ29712 1 2013-07-16 13:35:40 2013-07-16 13:35:40 -6807 6807 21 11 5417061 5418482 -1 90532 protein_coding ANNOTATED \N 1 6612 AFQ29713 1 2013-07-16 13:42:40 2013-07-16 13:42:40 -6808 6808 21 11 5418775 5419890 1 90546 protein_coding ANNOTATED \N 1 6613 AFQ29714 1 2013-07-16 13:36:58 2013-07-16 13:36:58 -6809 6809 21 11 5420084 5420689 1 90554 protein_coding ANNOTATED \N 1 6614 AFQ29715 1 2013-07-16 13:38:34 2013-07-16 13:38:34 -6810 6810 21 11 5420722 5422248 -1 90585 protein_coding ANNOTATED \N 1 6615 AFQ29716 1 2013-07-16 13:19:13 2013-07-16 13:19:13 -6811 6811 21 11 5422263 5422826 -1 90605 protein_coding ANNOTATED \N 1 6616 AFQ29717 1 2013-07-16 13:18:31 2013-07-16 13:18:31 -6812 6812 21 11 5423418 5424647 1 90625 protein_coding ANNOTATED \N 1 6617 AFQ29718 1 2013-07-16 13:25:47 2013-07-16 13:25:47 -6813 6813 21 11 5424657 5425703 1 90644 protein_coding ANNOTATED \N 1 6618 AFQ29719 1 2013-07-16 13:21:46 2013-07-16 13:21:46 -6814 6814 21 11 5425757 5426398 1 90658 protein_coding ANNOTATED \N 1 6619 AFQ29720 1 2013-07-16 13:37:42 2013-07-16 13:37:42 -6815 6815 21 11 5426463 5427347 -1 90674 protein_coding ANNOTATED \N 1 6620 AFQ29721 1 2013-07-16 13:18:06 2013-07-16 13:18:06 -6816 6816 21 11 5427314 5427619 -1 90691 protein_coding ANNOTATED \N 1 6621 AFQ29722 1 2013-07-16 13:17:04 2013-07-16 13:17:04 -6817 6817 21 11 5427729 5428736 -1 90708 protein_coding ANNOTATED \N 1 6622 AFQ29723 1 2013-07-16 13:23:17 2013-07-16 13:23:17 -6818 6818 21 11 5428733 5429749 -1 90724 protein_coding ANNOTATED \N 1 6623 AFQ29724 1 2013-07-16 13:36:45 2013-07-16 13:36:45 -6819 6819 21 11 5429822 5430739 -1 90735 protein_coding ANNOTATED \N 1 6624 AFQ29725 1 2013-07-16 13:17:36 2013-07-16 13:17:36 -6820 6820 21 11 5431071 5432120 1 90754 protein_coding ANNOTATED \N 1 6625 AFQ29726 1 2013-07-16 13:07:40 2013-07-16 13:07:40 -6821 6821 21 11 5432316 5432684 -1 90762 protein_coding ANNOTATED \N 1 6626 AFQ29727 1 2013-07-16 13:06:47 2013-07-16 13:06:47 -6822 6822 21 11 5432871 5433110 1 90774 protein_coding ANNOTATED \N 1 6627 AFQ29728 1 2013-07-16 13:27:31 2013-07-16 13:27:31 -6823 6823 21 11 5433235 5433348 1 90782 protein_coding ANNOTATED \N 1 6628 AFQ29729 1 2013-07-16 13:33:42 2013-07-16 13:33:42 -6824 6824 21 11 5433345 5433869 1 90793 protein_coding ANNOTATED \N 1 6629 AFQ29730 1 2013-07-16 13:41:20 2013-07-16 13:41:20 -6825 6825 21 11 5433890 5434339 1 90804 protein_coding ANNOTATED \N 1 6630 AFQ29731 1 2013-07-16 13:07:14 2013-07-16 13:07:14 -6826 6826 21 11 5434402 5434509 1 90812 protein_coding ANNOTATED \N 1 6631 AFQ29732 1 2013-07-16 13:21:58 2013-07-16 13:21:58 -6827 6827 21 11 5434502 5435170 1 90821 protein_coding ANNOTATED \N 1 6632 AFQ29733 1 2013-07-16 13:17:03 2013-07-16 13:17:03 -6828 6828 21 11 5435410 5436675 1 90835 protein_coding ANNOTATED \N 1 6633 AFQ29734 1 2013-07-16 13:28:54 2013-07-16 13:28:54 -6829 6829 21 11 5436813 5438039 1 90859 protein_coding ANNOTATED \N 1 6634 AFQ29735 1 2013-07-16 13:25:02 2013-07-16 13:25:02 -6830 6830 21 11 5438269 5438649 1 90867 protein_coding ANNOTATED \N 1 6635 AFQ29736 1 2013-07-16 13:13:32 2013-07-16 13:13:32 -6831 6831 21 11 5438784 5439416 -1 90876 protein_coding ANNOTATED \N 1 6636 AFQ29737 1 2013-07-16 13:39:09 2013-07-16 13:39:09 -6832 6832 21 11 5439766 5440875 1 90885 protein_coding ANNOTATED \N 1 6637 AFQ29738 1 2013-07-16 13:26:23 2013-07-16 13:26:23 -6833 6833 21 11 5440987 5441769 1 90894 protein_coding ANNOTATED \N 1 6638 AFQ29739 1 2013-07-16 13:38:43 2013-07-16 13:38:43 -6834 6834 21 11 5441783 5443084 -1 90910 protein_coding ANNOTATED \N 1 6639 AFQ29740 1 2013-07-16 13:38:35 2013-07-16 13:38:35 -6835 6835 21 11 5443231 5444757 -1 90930 protein_coding ANNOTATED \N 1 6640 AFQ29741 1 2013-07-16 13:25:19 2013-07-16 13:25:19 -6836 6836 21 11 5445339 5446424 1 90942 protein_coding ANNOTATED \N 1 6641 AFQ29742 1 2013-07-16 13:29:55 2013-07-16 13:29:55 -6837 6837 21 11 5446478 5447170 -1 90959 protein_coding ANNOTATED \N 1 6642 AFQ29743 1 2013-07-16 13:27:59 2013-07-16 13:27:59 -6838 6838 21 11 5447281 5448075 -1 90975 protein_coding ANNOTATED \N 1 6643 AFQ29744 1 2013-07-16 13:42:24 2013-07-16 13:42:24 -6839 6839 21 11 5448197 5448919 -1 90994 protein_coding ANNOTATED \N 1 6644 AFQ29745 1 2013-07-16 13:17:09 2013-07-16 13:17:09 -6840 6840 21 11 5449130 5450422 1 91009 protein_coding ANNOTATED \N 1 6645 AFQ29746 1 2013-07-16 13:23:58 2013-07-16 13:23:58 -6841 6841 21 11 5450569 5451018 1 91037 protein_coding ANNOTATED \N 1 6646 AFQ29747 1 2013-07-16 13:21:31 2013-07-16 13:21:31 -6842 6842 21 11 5451287 5452519 1 91054 protein_coding ANNOTATED \N 1 6647 AFQ29748 1 2013-07-16 13:12:42 2013-07-16 13:12:42 -6843 6843 21 11 5452550 5453548 1 91074 protein_coding ANNOTATED \N 1 6648 AFQ29749 1 2013-07-16 13:40:34 2013-07-16 13:40:34 -6844 6844 21 11 5453648 5455063 1 91094 protein_coding ANNOTATED \N 1 6649 AFQ29750 1 2013-07-16 13:29:37 2013-07-16 13:29:37 -6845 6845 21 11 5455101 5456063 1 91111 protein_coding ANNOTATED \N 1 6650 AFQ29751 1 2013-07-16 13:15:57 2013-07-16 13:15:57 -6846 6846 21 11 5456265 5456954 1 91134 protein_coding ANNOTATED \N 1 6651 AFQ29752 1 2013-07-16 13:43:30 2013-07-16 13:43:30 -6847 6847 21 11 5457111 5457794 1 91142 protein_coding ANNOTATED \N 1 6652 AFQ29753 1 2013-07-16 13:24:27 2013-07-16 13:24:27 -6848 6848 21 11 5457918 5459252 -1 91160 protein_coding ANNOTATED \N 1 6653 AFQ29754 1 2013-07-16 13:29:36 2013-07-16 13:29:36 -6849 6849 21 11 5459496 5461160 1 91181 protein_coding ANNOTATED \N 1 6654 AFQ29755 1 2013-07-16 13:39:41 2013-07-16 13:39:41 -6850 6850 21 11 5461366 5463003 1 91208 protein_coding ANNOTATED \N 1 6655 AFQ29756 1 2013-07-16 13:28:27 2013-07-16 13:28:27 -6851 6851 21 11 5463008 5463799 1 91217 protein_coding ANNOTATED \N 1 6656 AFQ29757 1 2013-07-16 13:38:08 2013-07-16 13:38:08 -6852 6852 21 11 5464105 5466966 1 91227 protein_coding ANNOTATED \N 1 6657 AFQ29758 1 2013-07-16 13:35:17 2013-07-16 13:35:17 -6853 6853 21 11 5467007 5469196 -1 91254 protein_coding ANNOTATED \N 1 6658 AFQ29759 1 2013-07-16 13:14:36 2013-07-16 13:14:36 -6854 6854 21 11 5469573 5470382 1 91274 protein_coding ANNOTATED \N 1 6659 AFQ29760 1 2013-07-16 13:16:51 2013-07-16 13:16:51 -6855 6855 21 11 5470400 5471056 1 91294 protein_coding ANNOTATED \N 1 6660 AFQ29761 1 2013-07-16 13:28:09 2013-07-16 13:28:09 -6856 6856 21 11 5471173 5472486 -1 91308 protein_coding ANNOTATED \N 1 6661 AFQ29762 1 2013-07-16 13:07:55 2013-07-16 13:07:55 -6857 6857 21 11 5472987 5474729 1 91326 protein_coding ANNOTATED \N 1 6662 AFQ29763 1 2013-07-16 13:11:53 2013-07-16 13:11:53 -6858 6858 21 11 5474867 5478448 1 91345 protein_coding ANNOTATED \N 1 6663 AFQ29764 1 2013-07-16 13:18:02 2013-07-16 13:18:02 -6859 6859 21 11 5478704 5479024 1 91355 protein_coding ANNOTATED \N 1 6664 AFQ29765 1 2013-07-16 13:13:54 2013-07-16 13:13:54 -6860 6860 21 11 5478996 5479769 1 91371 protein_coding ANNOTATED \N 1 6665 AFQ29766 1 2013-07-16 13:42:57 2013-07-16 13:42:57 -6861 6861 21 11 5479766 5480764 1 91383 protein_coding ANNOTATED \N 1 6666 AFQ29767 1 2013-07-16 13:19:08 2013-07-16 13:19:08 -6862 6862 21 11 5480761 5481510 1 91402 protein_coding ANNOTATED \N 1 6667 AFQ29768 1 2013-07-16 13:32:58 2013-07-16 13:32:58 -6863 6863 21 11 5481906 5483450 1 91421 protein_coding ANNOTATED \N 1 6668 AFQ29769 1 2013-07-16 13:32:53 2013-07-16 13:32:53 -6864 6864 21 11 5483891 5485915 -1 91448 protein_coding ANNOTATED \N 1 6669 AFQ29770 1 2013-07-16 13:41:04 2013-07-16 13:41:04 -6865 6865 21 11 5486287 5486658 1 91457 protein_coding ANNOTATED \N 1 6670 AFQ29771 1 2013-07-16 13:41:32 2013-07-16 13:41:32 -6866 6866 21 11 5486669 5486983 1 91470 protein_coding ANNOTATED \N 1 6671 AFQ29772 1 2013-07-16 13:11:32 2013-07-16 13:11:32 -6867 6867 21 11 5486997 5487239 1 91478 protein_coding ANNOTATED \N 1 6672 AFQ29773 1 2013-07-16 13:14:08 2013-07-16 13:14:08 -6868 6868 21 11 5487365 5487508 1 91486 protein_coding ANNOTATED \N 1 6673 AFQ29774 1 2013-07-16 13:12:04 2013-07-16 13:12:04 -6869 6869 21 11 5487589 5488170 1 91508 protein_coding ANNOTATED \N 1 6674 AFQ29775 1 2013-07-16 13:21:11 2013-07-16 13:21:11 -6870 6870 21 11 5488237 5489469 1 91519 protein_coding ANNOTATED \N 1 6675 AFQ29776 1 2013-07-16 13:11:12 2013-07-16 13:11:12 -6871 6871 21 11 5489583 5489777 1 91532 protein_coding ANNOTATED \N 1 6676 AFQ29777 1 2013-07-16 13:12:54 2013-07-16 13:12:54 -6872 6872 21 11 5489847 5491130 -1 91543 protein_coding ANNOTATED \N 1 6677 AFQ29778 1 2013-07-16 13:32:05 2013-07-16 13:32:05 -6873 6873 21 11 5491239 5492552 -1 91558 protein_coding ANNOTATED \N 1 6678 AFQ29779 1 2013-07-16 13:20:17 2013-07-16 13:20:17 -6874 6874 21 11 5492706 5492999 1 91567 protein_coding ANNOTATED \N 1 6679 AFQ29780 1 2013-07-16 13:38:57 2013-07-16 13:38:57 -6875 6875 21 11 5493350 5494780 1 91591 protein_coding ANNOTATED \N 1 6680 AFQ29781 1 2013-07-16 13:36:29 2013-07-16 13:36:29 -6876 6876 21 11 5494895 315 -1 91601 protein_coding ANNOTATED \N 1 6681 AFQ24231 1 2013-07-16 13:43:36 2013-07-16 13:43:36 -6877 6877 21 11 529 1407 1 91610 protein_coding ANNOTATED \N 1 6682 AFQ24232 1 2013-07-16 13:36:41 2013-07-16 13:36:41 -6878 6878 21 11 1536 2132 1 91622 protein_coding ANNOTATED \N 1 6683 AFQ24233 1 2013-07-16 13:09:10 2013-07-16 13:09:10 -6879 6879 21 11 2156 2740 1 91634 protein_coding ANNOTATED \N 1 6684 AFQ24234 1 2013-07-16 13:08:16 2013-07-16 13:08:16 -6880 6880 21 11 2826 3404 1 91646 protein_coding ANNOTATED \N 1 6685 AFQ24235 1 2013-07-16 13:18:54 2013-07-16 13:18:54 -6881 6881 21 11 3477 4268 1 91659 protein_coding ANNOTATED \N 1 6686 AFQ24236 1 2013-07-16 13:37:12 2013-07-16 13:37:12 -6882 6882 21 11 4378 6009 1 91668 protein_coding ANNOTATED \N 1 6687 AFQ24237 1 2013-07-16 13:31:30 2013-07-16 13:31:30 -6883 6883 21 11 6028 7110 1 91677 protein_coding ANNOTATED \N 1 6688 AFQ24238 1 2013-07-16 13:19:21 2013-07-16 13:19:21 -6884 6884 21 11 7146 9812 -1 91702 protein_coding ANNOTATED \N 1 6689 AFQ24239 1 2013-07-16 13:24:54 2013-07-16 13:24:54 +6626 6626 21 3 700 2754 -1 88461 ensembl protein_coding ANNOTATED \N 1 6463 AFQ30217 1 2013-07-16 13:03:32 2013-07-16 13:03:32 +6627 6627 21 3 2758 4539 -1 88470 ensembl protein_coding ANNOTATED \N 1 6464 AFQ30218 1 2013-07-16 13:03:51 2013-07-16 13:03:51 +6628 6628 21 3 4552 5766 -1 88478 ensembl protein_coding ANNOTATED \N 1 6465 AFQ30219 1 2013-07-16 13:03:57 2013-07-16 13:03:57 +6629 6629 21 3 5781 6728 -1 88486 ensembl protein_coding ANNOTATED \N 1 6466 AFQ30220 1 2013-07-16 13:03:17 2013-07-16 13:03:17 +6630 6630 21 3 6744 7493 -1 88494 ensembl protein_coding ANNOTATED \N 1 6467 AFQ30221 1 2013-07-16 13:03:24 2013-07-16 13:03:24 +6631 6631 21 3 7496 7870 -1 88502 ensembl protein_coding ANNOTATED \N 1 6468 AFQ30222 1 2013-07-16 13:03:25 2013-07-16 13:03:25 +6632 6632 21 3 7968 8195 -1 88510 ensembl protein_coding ANNOTATED \N 1 6469 AFQ30223 1 2013-07-16 13:04:10 2013-07-16 13:04:10 +6633 6633 21 3 8271 8933 -1 88519 ensembl protein_coding ANNOTATED \N 1 6470 AFQ30224 1 2013-07-16 13:04:09 2013-07-16 13:04:09 +6634 6634 21 3 230089 230622 1 88527 ensembl protein_coding ANNOTATED \N 1 6471 AFQ30448 1 2013-07-16 13:03:54 2013-07-16 13:03:54 +6635 6635 21 3 230700 230885 1 88535 ensembl protein_coding ANNOTATED \N 1 6472 AFQ30449 1 2013-07-16 13:03:16 2013-07-16 13:03:16 +6636 6636 21 3 230948 231418 1 88543 ensembl protein_coding ANNOTATED \N 1 6473 AFQ30450 1 2013-07-16 13:03:37 2013-07-16 13:03:37 +6637 6637 21 3 231603 231902 1 88551 ensembl protein_coding ANNOTATED \N 1 6474 AFQ30451 1 2013-07-16 13:04:15 2013-07-16 13:04:15 +6638 6638 21 3 232697 232912 1 88559 ensembl protein_coding ANNOTATED \N 1 6475 AFQ30452 1 2013-07-16 13:03:31 2013-07-16 13:03:31 +6639 6639 21 3 232927 233595 -1 88567 ensembl protein_coding ANNOTATED \N 1 6476 AFQ30453 1 2013-07-16 13:04:11 2013-07-16 13:04:11 +6640 6640 21 3 233785 233991 1 88575 ensembl protein_coding ANNOTATED \N 1 6477 AFQ30454 1 2013-07-16 13:03:49 2013-07-16 13:03:49 +6641 6641 21 3 234076 235323 -1 88583 ensembl protein_coding ANNOTATED \N 1 6478 AFQ30455 1 2013-07-16 13:03:34 2013-07-16 13:03:34 +6642 6642 21 3 235337 685 -1 88591 ensembl protein_coding ANNOTATED \N 1 6479 AFQ30216 1 2013-07-16 13:03:58 2013-07-16 13:03:58 +6643 6643 21 3 150202 151044 1 88607 ensembl protein_coding ANNOTATED \N 1 6480 AFQ30343 1 2013-07-16 13:03:44 2013-07-16 13:03:44 +6644 6644 21 3 151325 153892 1 88615 ensembl protein_coding ANNOTATED \N 1 6481 AFQ30344 1 2013-07-16 13:04:07 2013-07-16 13:04:07 +6645 6645 21 3 153966 154949 1 88630 ensembl protein_coding ANNOTATED \N 1 6482 AFQ30345 1 2013-07-16 13:04:11 2013-07-16 13:04:11 +6646 6646 28 3 155169 155243 1 88632 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31789 1 2013-07-16 13:04:17 2013-07-16 13:04:17 +6647 6647 28 3 155250 155329 1 88635 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31791 1 2013-07-16 13:04:16 2013-07-16 13:04:16 +6648 6648 28 3 155338 155425 1 88638 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31793 1 2013-07-16 13:04:17 2013-07-16 13:04:17 +6649 6649 28 3 155623 155697 1 88641 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31795 1 2013-07-16 13:04:17 2013-07-16 13:04:17 +6650 6650 28 3 155704 155775 1 88644 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31797 1 2013-07-16 13:04:18 2013-07-16 13:04:18 +6651 6651 28 3 155782 155854 1 88647 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31799 1 2013-07-16 13:04:18 2013-07-16 13:04:18 +6652 6652 28 3 156057 156133 1 88650 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31801 1 2013-07-16 13:04:17 2013-07-16 13:04:17 +6653 6653 28 3 156290 156363 1 88653 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31803 1 2013-07-16 13:04:17 2013-07-16 13:04:17 +6654 6654 28 3 156374 156448 1 88656 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31805 1 2013-07-16 13:04:17 2013-07-16 13:04:17 +6655 6655 28 3 156548 156621 1 88659 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31807 1 2013-07-16 13:04:16 2013-07-16 13:04:16 +6656 6656 28 3 156632 156705 1 88662 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31809 1 2013-07-16 13:04:17 2013-07-16 13:04:17 +6657 6657 28 3 156735 156807 1 88665 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31811 1 2013-07-16 13:04:17 2013-07-16 13:04:17 +6658 6658 21 3 156856 157386 1 88674 ensembl protein_coding ANNOTATED \N 1 6483 AFQ30346 1 2013-07-16 13:03:59 2013-07-16 13:03:59 +6659 6659 28 3 157418 157494 1 88676 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31813 1 2013-07-16 13:04:17 2013-07-16 13:04:17 +6660 6660 28 3 157503 157575 1 88679 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31815 1 2013-07-16 13:04:17 2013-07-16 13:04:17 +6661 6661 28 3 157852 157935 1 88682 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31817 1 2013-07-16 13:04:17 2013-07-16 13:04:17 +6662 6662 28 3 157939 158012 1 88685 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31819 1 2013-07-16 13:04:18 2013-07-16 13:04:18 +6663 6663 28 3 158104 158192 1 88688 ensembl tRNA ANNOTATED \N 1 \N BTF1_t31821 1 2013-07-16 13:04:16 2013-07-16 13:04:16 +6664 6664 21 3 158412 158852 1 88697 ensembl protein_coding ANNOTATED \N 1 6484 AFQ30347 1 2013-07-16 13:04:12 2013-07-16 13:04:12 +6665 6665 21 3 158878 159462 1 88715 ensembl protein_coding ANNOTATED \N 1 6485 AFQ30348 1 2013-07-16 13:03:39 2013-07-16 13:03:39 +6666 6666 21 3 159476 159976 1 88723 ensembl protein_coding ANNOTATED \N 1 6486 AFQ30349 1 2013-07-16 13:03:17 2013-07-16 13:03:17 +6667 6667 21 3 159997 160533 1 88739 ensembl protein_coding ANNOTATED \N 1 6487 AFQ30350 1 2013-07-16 13:03:43 2013-07-16 13:03:43 +6668 6668 21 4 210132 210989 1 88747 ensembl protein_coding ANNOTATED \N 1 6488 AFQ30645 1 2013-07-16 13:04:34 2013-07-16 13:04:34 +6669 6669 21 4 211116 212180 1 88755 ensembl protein_coding ANNOTATED \N 1 6489 AFQ30646 1 2013-07-16 13:04:43 2013-07-16 13:04:43 +6670 6670 21 4 212807 213178 1 88763 ensembl protein_coding ANNOTATED \N 1 6490 AFQ30647 1 2013-07-16 13:04:52 2013-07-16 13:04:52 +6671 6671 21 4 213615 213926 1 88772 ensembl protein_coding ANNOTATED \N 1 6491 AFQ30648 1 2013-07-16 13:04:34 2013-07-16 13:04:34 +6672 6672 21 4 213957 214370 1 88786 ensembl protein_coding ANNOTATED \N 1 6492 AFQ30649 1 2013-07-16 13:05:04 2013-07-16 13:05:04 +6673 6673 21 4 215358 215726 1 88795 ensembl protein_coding ANNOTATED \N 1 6493 AFQ30650 1 2013-07-16 13:04:44 2013-07-16 13:04:44 +6674 6674 21 4 215708 216049 1 88803 ensembl protein_coding ANNOTATED \N 1 6494 AFQ30651 1 2013-07-16 13:04:33 2013-07-16 13:04:33 +6675 6675 21 4 216280 217335 1 88812 ensembl protein_coding ANNOTATED \N 1 6495 AFQ30652 1 2013-07-16 13:05:02 2013-07-16 13:05:02 +6676 6676 21 4 217755 218327 1 88820 ensembl protein_coding ANNOTATED \N 1 6496 AFQ30653 1 2013-07-16 13:05:03 2013-07-16 13:05:03 +6677 6677 21 4 218689 219771 1 88835 ensembl protein_coding ANNOTATED \N 1 6497 AFQ30654 1 2013-07-16 13:05:05 2013-07-16 13:05:05 +6678 6678 21 4 220171 220830 -1 88850 ensembl protein_coding ANNOTATED \N 1 6498 AFQ30655 1 2013-07-16 13:04:36 2013-07-16 13:04:36 +6679 6679 21 4 221204 221416 1 88858 ensembl protein_coding ANNOTATED \N 1 6499 AFQ30656 1 2013-07-16 13:04:24 2013-07-16 13:04:24 +6680 6680 21 4 221988 222215 1 88876 ensembl protein_coding ANNOTATED \N 1 6500 AFQ30657 1 2013-07-16 13:04:46 2013-07-16 13:04:46 +6681 6681 21 4 222287 432 1 88891 ensembl protein_coding ANNOTATED \N 1 6501 AFQ30658 1 2013-07-16 13:04:21 2013-07-16 13:04:21 +6682 6682 21 4 572 1483 -1 88901 ensembl protein_coding ANNOTATED \N 1 6502 AFQ30456 1 2013-07-16 13:04:22 2013-07-16 13:04:22 +6683 6683 21 4 1640 2599 -1 88912 ensembl protein_coding ANNOTATED \N 1 6503 AFQ30457 1 2013-07-16 13:04:31 2013-07-16 13:04:31 +6684 6684 21 4 2873 3121 1 88920 ensembl protein_coding ANNOTATED \N 1 6504 AFQ30458 1 2013-07-16 13:04:43 2013-07-16 13:04:43 +6685 6685 21 4 3135 3731 1 88935 ensembl protein_coding ANNOTATED \N 1 6505 AFQ30459 1 2013-07-16 13:04:43 2013-07-16 13:04:43 +6686 6686 21 4 3847 4158 -1 88944 ensembl protein_coding ANNOTATED \N 1 6506 AFQ30460 1 2013-07-16 13:05:02 2013-07-16 13:05:02 +6687 6687 21 4 4626 5060 -1 88952 ensembl protein_coding ANNOTATED \N 1 6507 AFQ30461 1 2013-07-16 13:04:38 2013-07-16 13:04:38 +6688 6688 21 4 5444 6019 -1 88960 ensembl protein_coding ANNOTATED \N 1 6508 AFQ30462 1 2013-07-16 13:04:53 2013-07-16 13:04:53 +6689 6689 21 4 7087 8286 -1 88976 ensembl protein_coding ANNOTATED \N 1 6509 AFQ30463 1 2013-07-16 13:04:41 2013-07-16 13:04:41 +6690 6690 21 4 8316 8516 -1 88984 ensembl protein_coding ANNOTATED \N 1 6510 AFQ30464 1 2013-07-16 13:05:05 2013-07-16 13:05:05 +6691 6691 21 4 8683 8943 -1 88992 ensembl protein_coding ANNOTATED \N 1 6511 AFQ30465 1 2013-07-16 13:05:01 2013-07-16 13:05:01 +6692 6692 21 4 9011 10948 -1 89000 ensembl protein_coding ANNOTATED \N 1 6512 AFQ30466 1 2013-07-16 13:04:45 2013-07-16 13:04:45 +6693 6693 21 7 347058 347492 -1 89008 ensembl protein_coding ANNOTATED \N 1 6513 AFQ30213 1 2013-07-16 13:05:41 2013-07-16 13:05:41 +6694 6694 21 7 347641 348741 -1 89016 ensembl protein_coding ANNOTATED \N 1 6514 AFQ30214 1 2013-07-16 13:06:06 2013-07-16 13:06:06 +6695 6695 21 7 348754 349407 -1 89024 ensembl protein_coding ANNOTATED \N 1 6515 AFQ30215 1 2013-07-16 13:06:29 2013-07-16 13:06:29 +6696 6696 21 7 349459 333 -1 89032 ensembl protein_coding ANNOTATED \N 1 6516 AFQ29782 1 2013-07-16 13:06:14 2013-07-16 13:06:14 +6697 6697 21 7 453 1598 -1 89040 ensembl protein_coding ANNOTATED \N 1 6517 AFQ29783 1 2013-07-16 13:06:04 2013-07-16 13:06:04 +6698 6698 21 7 1612 1947 -1 89048 ensembl protein_coding ANNOTATED \N 1 6518 AFQ29784 1 2013-07-16 13:05:49 2013-07-16 13:05:49 +6699 6699 21 7 2425 2937 -1 89056 ensembl protein_coding ANNOTATED \N 1 6519 AFQ29785 1 2013-07-16 13:05:26 2013-07-16 13:05:26 +6700 6700 21 7 2957 3427 -1 89064 ensembl protein_coding ANNOTATED \N 1 6520 AFQ29786 1 2013-07-16 13:05:35 2013-07-16 13:05:35 +6701 6701 21 7 3458 3892 -1 89072 ensembl protein_coding ANNOTATED \N 1 6521 AFQ29787 1 2013-07-16 13:05:15 2013-07-16 13:05:15 +6702 6702 21 7 4042 4494 -1 89080 ensembl protein_coding ANNOTATED \N 1 6522 AFQ29788 1 2013-07-16 13:05:33 2013-07-16 13:05:33 +6703 6703 21 7 4528 4965 -1 89088 ensembl protein_coding ANNOTATED \N 1 6523 AFQ29789 1 2013-07-16 13:05:38 2013-07-16 13:05:38 +6704 6704 21 11 5300113 5300397 1 89096 ensembl protein_coding ANNOTATED \N 1 6524 AFQ29625 1 2013-07-16 13:09:18 2013-07-16 13:09:18 +6705 6705 21 11 5300922 5301548 1 89104 ensembl protein_coding ANNOTATED \N 1 6525 AFQ29626 1 2013-07-16 13:31:48 2013-07-16 13:31:48 +6706 6706 21 11 5301578 5302180 1 89118 ensembl protein_coding ANNOTATED \N 1 6526 AFQ29627 1 2013-07-16 13:25:20 2013-07-16 13:25:20 +6707 6707 21 11 5302408 5303115 1 89126 ensembl protein_coding ANNOTATED \N 1 6527 AFQ29628 1 2013-07-16 13:12:50 2013-07-16 13:12:50 +6708 6708 21 11 5303151 5304335 1 89140 ensembl protein_coding ANNOTATED \N 1 6528 AFQ29629 1 2013-07-16 13:15:34 2013-07-16 13:15:34 +6709 6709 21 11 5304508 5305038 -1 89149 ensembl protein_coding ANNOTATED \N 1 6529 AFQ29630 1 2013-07-16 13:36:54 2013-07-16 13:36:54 +6710 6710 21 11 5305053 5306660 -1 89163 ensembl protein_coding ANNOTATED \N 1 6530 AFQ29631 1 2013-07-16 13:29:49 2013-07-16 13:29:49 +6711 6711 21 11 5306860 5307246 1 89172 ensembl protein_coding ANNOTATED \N 1 6531 AFQ29632 1 2013-07-16 13:24:02 2013-07-16 13:24:02 +6712 6712 21 11 5308066 5309604 1 89202 ensembl protein_coding ANNOTATED \N 1 6532 AFQ29633 1 2013-07-16 13:09:04 2013-07-16 13:09:04 +6713 6713 21 11 5309909 5310424 1 89210 ensembl protein_coding ANNOTATED \N 1 6533 AFQ29634 1 2013-07-16 13:30:56 2013-07-16 13:30:56 +6714 6714 21 11 5310421 5311137 1 89218 ensembl protein_coding ANNOTATED \N 1 6534 AFQ29635 1 2013-07-16 13:26:15 2013-07-16 13:26:15 +6715 6715 21 11 5311140 5312159 1 89226 ensembl protein_coding ANNOTATED \N 1 6535 AFQ29636 1 2013-07-16 13:07:13 2013-07-16 13:07:13 +6716 6716 21 11 5312477 5312884 1 89234 ensembl protein_coding ANNOTATED \N 1 6536 AFQ29637 1 2013-07-16 13:40:17 2013-07-16 13:40:17 +6717 6717 21 11 5313273 5313545 1 89242 ensembl protein_coding ANNOTATED \N 1 6537 AFQ29638 1 2013-07-16 13:37:40 2013-07-16 13:37:40 +6718 6718 21 11 5313814 5315220 1 89265 ensembl protein_coding ANNOTATED \N 1 6538 AFQ29639 1 2013-07-16 13:39:16 2013-07-16 13:39:16 +6719 6719 21 11 5315514 5316017 1 89273 ensembl protein_coding ANNOTATED \N 1 6539 AFQ29640 1 2013-07-16 13:14:28 2013-07-16 13:14:28 +6720 6720 21 11 5315998 5317026 1 89289 ensembl protein_coding ANNOTATED \N 1 6540 AFQ29641 1 2013-07-16 13:08:35 2013-07-16 13:08:35 +6721 6721 21 11 5317047 5317253 1 89298 ensembl protein_coding ANNOTATED \N 1 6541 AFQ29642 1 2013-07-16 13:38:43 2013-07-16 13:38:43 +6722 6722 21 11 5317250 5318503 1 89317 ensembl protein_coding ANNOTATED \N 1 6542 AFQ29643 1 2013-07-16 13:29:35 2013-07-16 13:29:35 +6723 6723 21 11 5318504 5319310 1 89330 ensembl protein_coding ANNOTATED \N 1 6543 AFQ29644 1 2013-07-16 13:09:02 2013-07-16 13:09:02 +6724 6724 21 11 5319297 5319689 1 89338 ensembl protein_coding ANNOTATED \N 1 6544 AFQ29645 1 2013-07-16 13:42:07 2013-07-16 13:42:07 +6725 6725 21 11 5320179 5321504 1 89355 ensembl protein_coding ANNOTATED \N 1 6545 AFQ29646 1 2013-07-16 13:12:33 2013-07-16 13:12:33 +6726 6726 21 11 5321798 5322499 1 89376 ensembl protein_coding ANNOTATED \N 1 6546 AFQ29647 1 2013-07-16 13:43:11 2013-07-16 13:43:11 +6727 6727 21 11 5322483 5323988 1 89399 ensembl protein_coding ANNOTATED \N 1 6547 AFQ29648 1 2013-07-16 13:23:41 2013-07-16 13:23:41 +6728 6728 28 11 5324281 5325843 1 89401 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28371 1 2013-07-16 13:44:01 2013-07-16 13:44:01 +6729 6729 28 11 5325982 5328906 1 89404 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28399 1 2013-07-16 13:43:58 2013-07-16 13:43:58 +6730 6730 28 11 5328953 5329068 1 89407 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28343 1 2013-07-16 13:44:00 2013-07-16 13:44:00 +6731 6731 21 11 5329301 5330260 1 89420 ensembl protein_coding ANNOTATED \N 1 6548 AFQ29649 1 2013-07-16 13:36:53 2013-07-16 13:36:53 +6732 6732 21 11 5330461 5331192 1 89433 ensembl protein_coding ANNOTATED \N 1 6549 AFQ29650 1 2013-07-16 13:38:09 2013-07-16 13:38:09 +6733 6733 28 11 5331540 5333102 1 89435 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28373 1 2013-07-16 13:43:54 2013-07-16 13:43:54 +6734 6734 28 11 5333241 5336165 1 89438 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28401 1 2013-07-16 13:43:54 2013-07-16 13:43:54 +6735 6735 28 11 5336211 5336326 1 89441 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28345 1 2013-07-16 13:43:59 2013-07-16 13:43:59 +6736 6736 21 11 5336495 5336923 -1 89459 ensembl protein_coding ANNOTATED \N 1 6550 AFQ29651 1 2013-07-16 13:15:40 2013-07-16 13:15:40 +6737 6737 28 11 5339054 5340616 1 89461 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28375 1 2013-07-16 13:43:55 2013-07-16 13:43:55 +6738 6738 28 11 5340755 5343679 1 89464 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28403 1 2013-07-16 13:43:53 2013-07-16 13:43:53 +6739 6739 28 11 5343725 5343840 1 89467 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28347 1 2013-07-16 13:43:57 2013-07-16 13:43:57 +6740 6740 21 11 5343916 5344374 -1 89479 ensembl protein_coding ANNOTATED \N 1 6551 AFQ29652 1 2013-07-16 13:15:03 2013-07-16 13:15:03 +6741 6741 21 11 5344731 5345528 -1 89503 ensembl protein_coding ANNOTATED \N 1 6552 AFQ29653 1 2013-07-16 13:29:26 2013-07-16 13:29:26 +6742 6742 21 11 5345546 5346283 -1 89511 ensembl protein_coding ANNOTATED \N 1 6553 AFQ29654 1 2013-07-16 13:34:14 2013-07-16 13:34:14 +6743 6743 21 11 5346276 5347205 -1 89530 ensembl protein_coding ANNOTATED \N 1 6554 AFQ29655 1 2013-07-16 13:27:09 2013-07-16 13:27:09 +6744 6744 21 11 5347274 5348287 -1 89554 ensembl protein_coding ANNOTATED \N 1 6555 AFQ29656 1 2013-07-16 13:20:05 2013-07-16 13:20:05 +6745 6745 21 11 5348277 5348990 -1 89575 ensembl protein_coding ANNOTATED \N 1 6556 AFQ29657 1 2013-07-16 13:33:30 2013-07-16 13:33:30 +6746 6746 28 11 5349468 5351030 1 89577 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28377 1 2013-07-16 13:43:53 2013-07-16 13:43:53 +6747 6747 28 11 5351169 5354093 1 89580 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28405 1 2013-07-16 13:43:54 2013-07-16 13:43:54 +6748 6748 28 11 5354139 5354254 1 89583 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28349 1 2013-07-16 13:43:58 2013-07-16 13:43:58 +6749 6749 21 11 5354467 5355387 1 89596 ensembl protein_coding ANNOTATED \N 1 6557 AFQ29658 1 2013-07-16 13:23:57 2013-07-16 13:23:57 +6750 6750 21 11 5355474 5356265 -1 89610 ensembl protein_coding ANNOTATED \N 1 6558 AFQ29659 1 2013-07-16 13:21:59 2013-07-16 13:21:59 +6751 6751 28 11 5356579 5358141 1 89612 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28379 1 2013-07-16 13:43:53 2013-07-16 13:43:53 +6752 6752 28 11 5358280 5361204 1 89615 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28407 1 2013-07-16 13:43:53 2013-07-16 13:43:53 +6753 6753 28 11 5361251 5361366 1 89618 ensembl rRNA ANNOTATED \N 1 \N BTF1_r28351 1 2013-07-16 13:43:55 2013-07-16 13:43:55 +6754 6754 21 11 5362106 5362591 1 89634 ensembl protein_coding ANNOTATED \N 1 6559 AFQ29660 1 2013-07-16 13:12:36 2013-07-16 13:12:36 +6755 6755 21 11 5362588 5363739 1 89663 ensembl protein_coding ANNOTATED \N 1 6560 AFQ29661 1 2013-07-16 13:07:35 2013-07-16 13:07:35 +6756 6756 21 11 5363736 5365043 1 89686 ensembl protein_coding ANNOTATED \N 1 6561 AFQ29662 1 2013-07-16 13:17:58 2013-07-16 13:17:58 +6757 6757 21 11 5365132 5365851 1 89704 ensembl protein_coding ANNOTATED \N 1 6562 AFQ29663 1 2013-07-16 13:14:58 2013-07-16 13:14:58 +6758 6758 21 11 5365844 5366098 1 89716 ensembl protein_coding ANNOTATED \N 1 6563 AFQ29664 1 2013-07-16 13:12:48 2013-07-16 13:12:48 +6759 6759 21 11 5366095 5366778 1 89737 ensembl protein_coding ANNOTATED \N 1 6564 AFQ29665 1 2013-07-16 13:20:46 2013-07-16 13:20:46 +6760 6760 21 11 5366762 5368981 1 89758 ensembl protein_coding ANNOTATED \N 1 6565 AFQ29666 1 2013-07-16 13:29:17 2013-07-16 13:29:17 +6761 6761 21 11 5368966 5370381 1 89781 ensembl protein_coding ANNOTATED \N 1 6566 AFQ29667 1 2013-07-16 13:10:58 2013-07-16 13:10:58 +6762 6762 21 11 5370487 5371527 1 89802 ensembl protein_coding ANNOTATED \N 1 6567 AFQ29668 1 2013-07-16 13:36:20 2013-07-16 13:36:20 +6763 6763 21 11 5371524 5372111 1 89822 ensembl protein_coding ANNOTATED \N 1 6568 AFQ29669 1 2013-07-16 13:23:37 2013-07-16 13:23:37 +6764 6764 21 11 5372136 5373671 1 89841 ensembl protein_coding ANNOTATED \N 1 6569 AFQ29670 1 2013-07-16 13:40:41 2013-07-16 13:40:41 +6765 6765 21 11 5374051 5375322 1 89872 ensembl protein_coding ANNOTATED \N 1 6570 AFQ29671 1 2013-07-16 13:22:35 2013-07-16 13:22:35 +6766 6766 21 11 5375359 5375523 -1 89886 ensembl protein_coding ANNOTATED \N 1 6571 AFQ29672 1 2013-07-16 13:41:32 2013-07-16 13:41:32 +6767 6767 21 11 5375539 5376384 -1 89899 ensembl protein_coding ANNOTATED \N 1 6572 AFQ29673 1 2013-07-16 13:27:17 2013-07-16 13:27:17 +6768 6768 21 11 5376603 5376980 -1 89908 ensembl protein_coding ANNOTATED \N 1 6573 AFQ29674 1 2013-07-16 13:42:21 2013-07-16 13:42:21 +6769 6769 21 11 5377262 5377951 1 89924 ensembl protein_coding ANNOTATED \N 1 6574 AFQ29675 1 2013-07-16 13:41:32 2013-07-16 13:41:32 +6770 6770 21 11 5377952 5380213 1 89949 ensembl protein_coding ANNOTATED \N 1 6575 AFQ29676 1 2013-07-16 13:30:44 2013-07-16 13:30:44 +6771 6771 21 11 5380228 5382237 1 89978 ensembl protein_coding ANNOTATED \N 1 6576 AFQ29677 1 2013-07-16 13:16:58 2013-07-16 13:16:58 +6772 6772 21 11 5382254 5383447 1 89987 ensembl protein_coding ANNOTATED \N 1 6577 AFQ29678 1 2013-07-16 13:26:19 2013-07-16 13:26:19 +6773 6773 21 11 5383544 5384314 1 89999 ensembl protein_coding ANNOTATED \N 1 6578 AFQ29679 1 2013-07-16 13:34:50 2013-07-16 13:34:50 +6774 6774 21 11 5384468 5386015 1 90024 ensembl protein_coding ANNOTATED \N 1 6579 AFQ29680 1 2013-07-16 13:22:13 2013-07-16 13:22:13 +6775 6775 21 11 5386286 5386831 -1 90036 ensembl protein_coding ANNOTATED \N 1 6580 AFQ29681 1 2013-07-16 13:38:42 2013-07-16 13:38:42 +6776 6776 21 11 5387304 5388323 1 90062 ensembl protein_coding ANNOTATED \N 1 6581 AFQ29682 1 2013-07-16 13:25:57 2013-07-16 13:25:57 +6777 6777 21 11 5388313 5388978 1 90078 ensembl protein_coding ANNOTATED \N 1 6582 AFQ29683 1 2013-07-16 13:08:07 2013-07-16 13:08:07 +6778 6778 21 11 5389000 5389854 1 90087 ensembl protein_coding ANNOTATED \N 1 6583 AFQ29684 1 2013-07-16 13:22:04 2013-07-16 13:22:04 +6779 6779 21 11 5390022 5390492 -1 90096 ensembl protein_coding ANNOTATED \N 1 6584 AFQ29685 1 2013-07-16 13:25:05 2013-07-16 13:25:05 +6780 6780 21 11 5390551 5390742 -1 90105 ensembl protein_coding ANNOTATED \N 1 6585 AFQ29686 1 2013-07-16 13:06:45 2013-07-16 13:06:45 +6781 6781 21 11 5390735 5391913 -1 90123 ensembl protein_coding ANNOTATED \N 1 6586 AFQ29687 1 2013-07-16 13:27:19 2013-07-16 13:27:19 +6782 6782 21 11 5391992 5392474 -1 90142 ensembl protein_coding ANNOTATED \N 1 6587 AFQ29688 1 2013-07-16 13:07:33 2013-07-16 13:07:33 +6783 6783 21 11 5392706 5392942 1 90151 ensembl protein_coding ANNOTATED \N 1 6588 AFQ29689 1 2013-07-16 13:23:54 2013-07-16 13:23:54 +6784 6784 21 11 5393084 5393374 1 90171 ensembl protein_coding ANNOTATED \N 1 6589 AFQ29690 1 2013-07-16 13:30:18 2013-07-16 13:30:18 +6785 6785 21 11 5393390 5394847 1 90192 ensembl protein_coding ANNOTATED \N 1 6590 AFQ29691 1 2013-07-16 13:37:11 2013-07-16 13:37:11 +6786 6786 21 11 5394862 5396289 1 90215 ensembl protein_coding ANNOTATED \N 1 6591 AFQ29692 1 2013-07-16 13:41:02 2013-07-16 13:41:02 +6787 6787 21 11 5396850 5397755 1 90233 ensembl protein_coding ANNOTATED \N 1 6592 AFQ29693 1 2013-07-16 13:28:06 2013-07-16 13:28:06 +6788 6788 21 11 5397896 5398642 1 90246 ensembl protein_coding ANNOTATED \N 1 6593 AFQ29694 1 2013-07-16 13:22:11 2013-07-16 13:22:11 +6789 6789 21 11 5398797 5400161 1 90266 ensembl protein_coding ANNOTATED \N 1 6594 AFQ29695 1 2013-07-16 13:20:01 2013-07-16 13:20:01 +6790 6790 21 11 5400277 5401644 1 90298 ensembl protein_coding ANNOTATED \N 1 6595 AFQ29696 1 2013-07-16 13:22:46 2013-07-16 13:22:46 +6791 6791 21 11 5401637 5403088 1 90317 ensembl protein_coding ANNOTATED \N 1 6596 AFQ29697 1 2013-07-16 13:14:19 2013-07-16 13:14:19 +6792 6792 21 11 5403136 5403459 1 90333 ensembl protein_coding ANNOTATED \N 1 6597 AFQ29698 1 2013-07-16 13:39:21 2013-07-16 13:39:21 +6793 6793 21 11 5403592 5404083 1 90345 ensembl protein_coding ANNOTATED \N 1 6598 AFQ29699 1 2013-07-16 13:09:08 2013-07-16 13:09:08 +6794 6794 21 11 5404128 5405357 -1 90359 ensembl protein_coding ANNOTATED \N 1 6599 AFQ29700 1 2013-07-16 13:26:05 2013-07-16 13:26:05 +6795 6795 21 11 5405474 5406556 -1 90375 ensembl protein_coding ANNOTATED \N 1 6600 AFQ29701 1 2013-07-16 13:41:01 2013-07-16 13:41:01 +6796 6796 21 11 5406704 5406877 -1 90383 ensembl protein_coding ANNOTATED \N 1 6601 AFQ29702 1 2013-07-16 13:35:08 2013-07-16 13:35:08 +6797 6797 21 11 5407094 5407801 1 90391 ensembl protein_coding ANNOTATED \N 1 6602 AFQ29703 1 2013-07-16 13:20:00 2013-07-16 13:20:00 +6798 6798 21 11 5407848 5409044 -1 90410 ensembl protein_coding ANNOTATED \N 1 6603 AFQ29704 1 2013-07-16 13:41:35 2013-07-16 13:41:35 +6799 6799 21 11 5409470 5410846 1 90432 ensembl protein_coding ANNOTATED \N 1 6604 AFQ29705 1 2013-07-16 13:36:03 2013-07-16 13:36:03 +6800 6800 21 11 5411007 5411996 1 90451 ensembl protein_coding ANNOTATED \N 1 6605 AFQ29706 1 2013-07-16 13:34:39 2013-07-16 13:34:39 +6801 6801 21 11 5412348 5412866 1 90460 ensembl protein_coding ANNOTATED \N 1 6606 AFQ29707 1 2013-07-16 13:08:22 2013-07-16 13:08:22 +6802 6802 21 11 5412961 5413668 1 90474 ensembl protein_coding ANNOTATED \N 1 6607 AFQ29708 1 2013-07-16 13:35:51 2013-07-16 13:35:51 +6803 6803 21 11 5413665 5413856 -1 90482 ensembl protein_coding ANNOTATED \N 1 6608 AFQ29709 1 2013-07-16 13:22:27 2013-07-16 13:22:27 +6804 6804 21 11 5413888 5414583 -1 90495 ensembl protein_coding ANNOTATED \N 1 6609 AFQ29710 1 2013-07-16 13:24:02 2013-07-16 13:24:02 +6805 6805 21 11 5414598 5415707 -1 90509 ensembl protein_coding ANNOTATED \N 1 6610 AFQ29711 1 2013-07-16 13:25:27 2013-07-16 13:25:27 +6806 6806 21 11 5415801 5417072 1 90517 ensembl protein_coding ANNOTATED \N 1 6611 AFQ29712 1 2013-07-16 13:35:40 2013-07-16 13:35:40 +6807 6807 21 11 5417061 5418482 -1 90532 ensembl protein_coding ANNOTATED \N 1 6612 AFQ29713 1 2013-07-16 13:42:40 2013-07-16 13:42:40 +6808 6808 21 11 5418775 5419890 1 90546 ensembl protein_coding ANNOTATED \N 1 6613 AFQ29714 1 2013-07-16 13:36:58 2013-07-16 13:36:58 +6809 6809 21 11 5420084 5420689 1 90554 ensembl protein_coding ANNOTATED \N 1 6614 AFQ29715 1 2013-07-16 13:38:34 2013-07-16 13:38:34 +6810 6810 21 11 5420722 5422248 -1 90585 ensembl protein_coding ANNOTATED \N 1 6615 AFQ29716 1 2013-07-16 13:19:13 2013-07-16 13:19:13 +6811 6811 21 11 5422263 5422826 -1 90605 ensembl protein_coding ANNOTATED \N 1 6616 AFQ29717 1 2013-07-16 13:18:31 2013-07-16 13:18:31 +6812 6812 21 11 5423418 5424647 1 90625 ensembl protein_coding ANNOTATED \N 1 6617 AFQ29718 1 2013-07-16 13:25:47 2013-07-16 13:25:47 +6813 6813 21 11 5424657 5425703 1 90644 ensembl protein_coding ANNOTATED \N 1 6618 AFQ29719 1 2013-07-16 13:21:46 2013-07-16 13:21:46 +6814 6814 21 11 5425757 5426398 1 90658 ensembl protein_coding ANNOTATED \N 1 6619 AFQ29720 1 2013-07-16 13:37:42 2013-07-16 13:37:42 +6815 6815 21 11 5426463 5427347 -1 90674 ensembl protein_coding ANNOTATED \N 1 6620 AFQ29721 1 2013-07-16 13:18:06 2013-07-16 13:18:06 +6816 6816 21 11 5427314 5427619 -1 90691 ensembl protein_coding ANNOTATED \N 1 6621 AFQ29722 1 2013-07-16 13:17:04 2013-07-16 13:17:04 +6817 6817 21 11 5427729 5428736 -1 90708 ensembl protein_coding ANNOTATED \N 1 6622 AFQ29723 1 2013-07-16 13:23:17 2013-07-16 13:23:17 +6818 6818 21 11 5428733 5429749 -1 90724 ensembl protein_coding ANNOTATED \N 1 6623 AFQ29724 1 2013-07-16 13:36:45 2013-07-16 13:36:45 +6819 6819 21 11 5429822 5430739 -1 90735 ensembl protein_coding ANNOTATED \N 1 6624 AFQ29725 1 2013-07-16 13:17:36 2013-07-16 13:17:36 +6820 6820 21 11 5431071 5432120 1 90754 ensembl protein_coding ANNOTATED \N 1 6625 AFQ29726 1 2013-07-16 13:07:40 2013-07-16 13:07:40 +6821 6821 21 11 5432316 5432684 -1 90762 ensembl protein_coding ANNOTATED \N 1 6626 AFQ29727 1 2013-07-16 13:06:47 2013-07-16 13:06:47 +6822 6822 21 11 5432871 5433110 1 90774 ensembl protein_coding ANNOTATED \N 1 6627 AFQ29728 1 2013-07-16 13:27:31 2013-07-16 13:27:31 +6823 6823 21 11 5433235 5433348 1 90782 ensembl protein_coding ANNOTATED \N 1 6628 AFQ29729 1 2013-07-16 13:33:42 2013-07-16 13:33:42 +6824 6824 21 11 5433345 5433869 1 90793 ensembl protein_coding ANNOTATED \N 1 6629 AFQ29730 1 2013-07-16 13:41:20 2013-07-16 13:41:20 +6825 6825 21 11 5433890 5434339 1 90804 ensembl protein_coding ANNOTATED \N 1 6630 AFQ29731 1 2013-07-16 13:07:14 2013-07-16 13:07:14 +6826 6826 21 11 5434402 5434509 1 90812 ensembl protein_coding ANNOTATED \N 1 6631 AFQ29732 1 2013-07-16 13:21:58 2013-07-16 13:21:58 +6827 6827 21 11 5434502 5435170 1 90821 ensembl protein_coding ANNOTATED \N 1 6632 AFQ29733 1 2013-07-16 13:17:03 2013-07-16 13:17:03 +6828 6828 21 11 5435410 5436675 1 90835 ensembl protein_coding ANNOTATED \N 1 6633 AFQ29734 1 2013-07-16 13:28:54 2013-07-16 13:28:54 +6829 6829 21 11 5436813 5438039 1 90859 ensembl protein_coding ANNOTATED \N 1 6634 AFQ29735 1 2013-07-16 13:25:02 2013-07-16 13:25:02 +6830 6830 21 11 5438269 5438649 1 90867 ensembl protein_coding ANNOTATED \N 1 6635 AFQ29736 1 2013-07-16 13:13:32 2013-07-16 13:13:32 +6831 6831 21 11 5438784 5439416 -1 90876 ensembl protein_coding ANNOTATED \N 1 6636 AFQ29737 1 2013-07-16 13:39:09 2013-07-16 13:39:09 +6832 6832 21 11 5439766 5440875 1 90885 ensembl protein_coding ANNOTATED \N 1 6637 AFQ29738 1 2013-07-16 13:26:23 2013-07-16 13:26:23 +6833 6833 21 11 5440987 5441769 1 90894 ensembl protein_coding ANNOTATED \N 1 6638 AFQ29739 1 2013-07-16 13:38:43 2013-07-16 13:38:43 +6834 6834 21 11 5441783 5443084 -1 90910 ensembl protein_coding ANNOTATED \N 1 6639 AFQ29740 1 2013-07-16 13:38:35 2013-07-16 13:38:35 +6835 6835 21 11 5443231 5444757 -1 90930 ensembl protein_coding ANNOTATED \N 1 6640 AFQ29741 1 2013-07-16 13:25:19 2013-07-16 13:25:19 +6836 6836 21 11 5445339 5446424 1 90942 ensembl protein_coding ANNOTATED \N 1 6641 AFQ29742 1 2013-07-16 13:29:55 2013-07-16 13:29:55 +6837 6837 21 11 5446478 5447170 -1 90959 ensembl protein_coding ANNOTATED \N 1 6642 AFQ29743 1 2013-07-16 13:27:59 2013-07-16 13:27:59 +6838 6838 21 11 5447281 5448075 -1 90975 ensembl protein_coding ANNOTATED \N 1 6643 AFQ29744 1 2013-07-16 13:42:24 2013-07-16 13:42:24 +6839 6839 21 11 5448197 5448919 -1 90994 ensembl protein_coding ANNOTATED \N 1 6644 AFQ29745 1 2013-07-16 13:17:09 2013-07-16 13:17:09 +6840 6840 21 11 5449130 5450422 1 91009 ensembl protein_coding ANNOTATED \N 1 6645 AFQ29746 1 2013-07-16 13:23:58 2013-07-16 13:23:58 +6841 6841 21 11 5450569 5451018 1 91037 ensembl protein_coding ANNOTATED \N 1 6646 AFQ29747 1 2013-07-16 13:21:31 2013-07-16 13:21:31 +6842 6842 21 11 5451287 5452519 1 91054 ensembl protein_coding ANNOTATED \N 1 6647 AFQ29748 1 2013-07-16 13:12:42 2013-07-16 13:12:42 +6843 6843 21 11 5452550 5453548 1 91074 ensembl protein_coding ANNOTATED \N 1 6648 AFQ29749 1 2013-07-16 13:40:34 2013-07-16 13:40:34 +6844 6844 21 11 5453648 5455063 1 91094 ensembl protein_coding ANNOTATED \N 1 6649 AFQ29750 1 2013-07-16 13:29:37 2013-07-16 13:29:37 +6845 6845 21 11 5455101 5456063 1 91111 ensembl protein_coding ANNOTATED \N 1 6650 AFQ29751 1 2013-07-16 13:15:57 2013-07-16 13:15:57 +6846 6846 21 11 5456265 5456954 1 91134 ensembl protein_coding ANNOTATED \N 1 6651 AFQ29752 1 2013-07-16 13:43:30 2013-07-16 13:43:30 +6847 6847 21 11 5457111 5457794 1 91142 ensembl protein_coding ANNOTATED \N 1 6652 AFQ29753 1 2013-07-16 13:24:27 2013-07-16 13:24:27 +6848 6848 21 11 5457918 5459252 -1 91160 ensembl protein_coding ANNOTATED \N 1 6653 AFQ29754 1 2013-07-16 13:29:36 2013-07-16 13:29:36 +6849 6849 21 11 5459496 5461160 1 91181 ensembl protein_coding ANNOTATED \N 1 6654 AFQ29755 1 2013-07-16 13:39:41 2013-07-16 13:39:41 +6850 6850 21 11 5461366 5463003 1 91208 ensembl protein_coding ANNOTATED \N 1 6655 AFQ29756 1 2013-07-16 13:28:27 2013-07-16 13:28:27 +6851 6851 21 11 5463008 5463799 1 91217 ensembl protein_coding ANNOTATED \N 1 6656 AFQ29757 1 2013-07-16 13:38:08 2013-07-16 13:38:08 +6852 6852 21 11 5464105 5466966 1 91227 ensembl protein_coding ANNOTATED \N 1 6657 AFQ29758 1 2013-07-16 13:35:17 2013-07-16 13:35:17 +6853 6853 21 11 5467007 5469196 -1 91254 ensembl protein_coding ANNOTATED \N 1 6658 AFQ29759 1 2013-07-16 13:14:36 2013-07-16 13:14:36 +6854 6854 21 11 5469573 5470382 1 91274 ensembl protein_coding ANNOTATED \N 1 6659 AFQ29760 1 2013-07-16 13:16:51 2013-07-16 13:16:51 +6855 6855 21 11 5470400 5471056 1 91294 ensembl protein_coding ANNOTATED \N 1 6660 AFQ29761 1 2013-07-16 13:28:09 2013-07-16 13:28:09 +6856 6856 21 11 5471173 5472486 -1 91308 ensembl protein_coding ANNOTATED \N 1 6661 AFQ29762 1 2013-07-16 13:07:55 2013-07-16 13:07:55 +6857 6857 21 11 5472987 5474729 1 91326 ensembl protein_coding ANNOTATED \N 1 6662 AFQ29763 1 2013-07-16 13:11:53 2013-07-16 13:11:53 +6858 6858 21 11 5474867 5478448 1 91345 ensembl protein_coding ANNOTATED \N 1 6663 AFQ29764 1 2013-07-16 13:18:02 2013-07-16 13:18:02 +6859 6859 21 11 5478704 5479024 1 91355 ensembl protein_coding ANNOTATED \N 1 6664 AFQ29765 1 2013-07-16 13:13:54 2013-07-16 13:13:54 +6860 6860 21 11 5478996 5479769 1 91371 ensembl protein_coding ANNOTATED \N 1 6665 AFQ29766 1 2013-07-16 13:42:57 2013-07-16 13:42:57 +6861 6861 21 11 5479766 5480764 1 91383 ensembl protein_coding ANNOTATED \N 1 6666 AFQ29767 1 2013-07-16 13:19:08 2013-07-16 13:19:08 +6862 6862 21 11 5480761 5481510 1 91402 ensembl protein_coding ANNOTATED \N 1 6667 AFQ29768 1 2013-07-16 13:32:58 2013-07-16 13:32:58 +6863 6863 21 11 5481906 5483450 1 91421 ensembl protein_coding ANNOTATED \N 1 6668 AFQ29769 1 2013-07-16 13:32:53 2013-07-16 13:32:53 +6864 6864 21 11 5483891 5485915 -1 91448 ensembl protein_coding ANNOTATED \N 1 6669 AFQ29770 1 2013-07-16 13:41:04 2013-07-16 13:41:04 +6865 6865 21 11 5486287 5486658 1 91457 ensembl protein_coding ANNOTATED \N 1 6670 AFQ29771 1 2013-07-16 13:41:32 2013-07-16 13:41:32 +6866 6866 21 11 5486669 5486983 1 91470 ensembl protein_coding ANNOTATED \N 1 6671 AFQ29772 1 2013-07-16 13:11:32 2013-07-16 13:11:32 +6867 6867 21 11 5486997 5487239 1 91478 ensembl protein_coding ANNOTATED \N 1 6672 AFQ29773 1 2013-07-16 13:14:08 2013-07-16 13:14:08 +6868 6868 21 11 5487365 5487508 1 91486 ensembl protein_coding ANNOTATED \N 1 6673 AFQ29774 1 2013-07-16 13:12:04 2013-07-16 13:12:04 +6869 6869 21 11 5487589 5488170 1 91508 ensembl protein_coding ANNOTATED \N 1 6674 AFQ29775 1 2013-07-16 13:21:11 2013-07-16 13:21:11 +6870 6870 21 11 5488237 5489469 1 91519 ensembl protein_coding ANNOTATED \N 1 6675 AFQ29776 1 2013-07-16 13:11:12 2013-07-16 13:11:12 +6871 6871 21 11 5489583 5489777 1 91532 ensembl protein_coding ANNOTATED \N 1 6676 AFQ29777 1 2013-07-16 13:12:54 2013-07-16 13:12:54 +6872 6872 21 11 5489847 5491130 -1 91543 ensembl protein_coding ANNOTATED \N 1 6677 AFQ29778 1 2013-07-16 13:32:05 2013-07-16 13:32:05 +6873 6873 21 11 5491239 5492552 -1 91558 ensembl protein_coding ANNOTATED \N 1 6678 AFQ29779 1 2013-07-16 13:20:17 2013-07-16 13:20:17 +6874 6874 21 11 5492706 5492999 1 91567 ensembl protein_coding ANNOTATED \N 1 6679 AFQ29780 1 2013-07-16 13:38:57 2013-07-16 13:38:57 +6875 6875 21 11 5493350 5494780 1 91591 ensembl protein_coding ANNOTATED \N 1 6680 AFQ29781 1 2013-07-16 13:36:29 2013-07-16 13:36:29 +6876 6876 21 11 5494895 315 -1 91601 ensembl protein_coding ANNOTATED \N 1 6681 AFQ24231 1 2013-07-16 13:43:36 2013-07-16 13:43:36 +6877 6877 21 11 529 1407 1 91610 ensembl protein_coding ANNOTATED \N 1 6682 AFQ24232 1 2013-07-16 13:36:41 2013-07-16 13:36:41 +6878 6878 21 11 1536 2132 1 91622 ensembl protein_coding ANNOTATED \N 1 6683 AFQ24233 1 2013-07-16 13:09:10 2013-07-16 13:09:10 +6879 6879 21 11 2156 2740 1 91634 ensembl protein_coding ANNOTATED \N 1 6684 AFQ24234 1 2013-07-16 13:08:16 2013-07-16 13:08:16 +6880 6880 21 11 2826 3404 1 91646 ensembl protein_coding ANNOTATED \N 1 6685 AFQ24235 1 2013-07-16 13:18:54 2013-07-16 13:18:54 +6881 6881 21 11 3477 4268 1 91659 ensembl protein_coding ANNOTATED \N 1 6686 AFQ24236 1 2013-07-16 13:37:12 2013-07-16 13:37:12 +6882 6882 21 11 4378 6009 1 91668 ensembl protein_coding ANNOTATED \N 1 6687 AFQ24237 1 2013-07-16 13:31:30 2013-07-16 13:31:30 +6883 6883 21 11 6028 7110 1 91677 ensembl protein_coding ANNOTATED \N 1 6688 AFQ24238 1 2013-07-16 13:19:21 2013-07-16 13:19:21 +6884 6884 21 11 7146 9812 -1 91702 ensembl protein_coding ANNOTATED \N 1 6689 AFQ24239 1 2013-07-16 13:24:54 2013-07-16 13:24:54