From bcd119263d7f363276278fddab4603e9778fe896 Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Fri, 11 Sep 2009 08:38:43 +0000
Subject: [PATCH] remove all the dependent xrefs from the table. Do not join
with xref table as tis does not matter
---
misc-scripts/xref_mapping/XrefMapper/XrefLoader.pm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/misc-scripts/xref_mapping/XrefMapper/XrefLoader.pm b/misc-scripts/xref_mapping/XrefMapper/XrefLoader.pm
index 9633ae3225..6b3a3952ca 100644
--- a/misc-scripts/xref_mapping/XrefMapper/XrefLoader.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/XrefLoader.pm
@@ -104,7 +104,7 @@ sub update{
my $go_sth = $self->core->dbc->prepare('DELETE FROM go_xref');
my $identity_sth = $self->core->dbc->prepare('DELETE identity_xref FROM identity_xref, object_xref, xref WHERE identity_xref.object_xref_id = object_xref.object_xref_id AND object_xref.xref_id = xref.xref_id AND xref.external_db_id = ?');
my $object_sth = $self->core->dbc->prepare('DELETE object_xref FROM object_xref, xref WHERE object_xref.xref_id = xref.xref_id AND xref.external_db_id = ?');
- my $dependent_sth = $self->core->dbc->prepare('DELETE dependent_xref FROM dependent_xref, xref WHERE dependent_xref.dependent_xref_id = xref.xref_id and xref.external_db_id = ?');
+ my $dependent_sth = $self->core->dbc->prepare('DELETE FROM dependent_xref WHERE external_db_id = ?');
my $xref_sth = $self->core->dbc->prepare('DELETE FROM xref WHERE xref.external_db_id = ?');
my $unmapped_sth = $self->core->dbc->prepare('DELETE FROM unmapped_object WHERE type="xref" and external_db_id = ?');
--
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