From bcd90892385ad223ee55e5e8876d68a4c13b8b5a Mon Sep 17 00:00:00 2001
From: Rhoda Kinsella <rhoda@ebi.ac.uk>
Date: Thu, 31 Jul 2008 13:37:12 +0000
Subject: [PATCH] Added subroutine add_synonyms used by the DBASSParser.pm
---
.../xref_mapping/XrefParser/BaseParser.pm | 17 +++++++++++++++++
1 file changed, 17 insertions(+)
diff --git a/misc-scripts/xref_mapping/XrefParser/BaseParser.pm b/misc-scripts/xref_mapping/XrefParser/BaseParser.pm
index 2b17425e87..912ce342ad 100644
--- a/misc-scripts/xref_mapping/XrefParser/BaseParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/BaseParser.pm
@@ -1799,6 +1799,23 @@ sub add_to_syn{
}
}
+
+sub add_synonym{
+ my ($self, $xref_id, $syn) = @_;
+
+ my $add_synonym_sth;
+
+ if(!defined($add_synonym_sth)){
+ $add_synonym_sth = $dbi->prepare("INSERT INTO synonym VALUES(?,?)");
+ }
+
+ $add_synonym_sth->execute( $xref_id, $syn )
+ or croak( $dbi->errstr() . "\n $xref_id\n $syn\n" );
+
+}
+
+
+
# --------------------------------------------------------------------------------
# Add a single record to the direct_xref table.
# Note that an xref must already have been added to the xref table (xref_id passed as 1st arg)
--
GitLab