From bd9a914e2c1ee7b4b75dc15820e7fc7acbdf79ee Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andreas=20Kusalananda=20K=C3=A4h=C3=A4ri?=
<ak4@sanger.ac.uk>
Date: Wed, 14 Feb 2007 16:00:42 +0000
Subject: [PATCH] The method fetch_by_Member() is deprecated in
Bio::EnsEMBL::Compara::DBSQL::HomologyAdaptor, changed to
fetch_all_by_Member().
---
modules/Bio/EnsEMBL/Gene.pm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/modules/Bio/EnsEMBL/Gene.pm b/modules/Bio/EnsEMBL/Gene.pm
index afedc9313c..24b5576234 100755
--- a/modules/Bio/EnsEMBL/Gene.pm
+++ b/modules/Bio/EnsEMBL/Gene.pm
@@ -574,7 +574,7 @@ sub get_all_homologous_Genes {
# Get the compara 'homologies' corresponding to 'member'
my $homology_adaptor = $compara_dba->get_adaptor('Homology');
- my @homolos = @{$homology_adaptor->fetch_by_Member($query_member)};
+ my @homolos = @{$homology_adaptor->fetch_all_by_Member($query_member)};
unless( scalar(@homolos) ){ return $self->{'homologues'} };
# Get the ensembl 'genes' corresponding to 'homologies'
--
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