From c1325273bd201c1766c76577697105e53b09dff5 Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Tue, 19 Dec 2006 12:55:08 +0000
Subject: [PATCH] new reason added
---
misc-scripts/unmapped_reason/unmapped_reason.txt | 1 +
misc-scripts/unmapped_reason/update_unmapped_reasons.pl | 4 ++--
2 files changed, 3 insertions(+), 2 deletions(-)
diff --git a/misc-scripts/unmapped_reason/unmapped_reason.txt b/misc-scripts/unmapped_reason/unmapped_reason.txt
index eb0f325fe7..b7b92411e9 100644
--- a/misc-scripts/unmapped_reason/unmapped_reason.txt
+++ b/misc-scripts/unmapped_reason/unmapped_reason.txt
@@ -13,3 +13,4 @@
14 Failed to match at thresholds Unable to match at the thresholds of 99% for the query or 99% for the target
15 Failed to match at thresholds Unable to match at the thresholds of 100% for the query or 100% for the target
16 Failed to match at thresholds Unable to match at the thresholds of 55% for the query or 55% for the target
+17 Parent xref failed to match Unable to match as parent xref was not mapped
diff --git a/misc-scripts/unmapped_reason/update_unmapped_reasons.pl b/misc-scripts/unmapped_reason/update_unmapped_reasons.pl
index 3f8fb13015..2aae78c5bd 100644
--- a/misc-scripts/unmapped_reason/update_unmapped_reasons.pl
+++ b/misc-scripts/unmapped_reason/update_unmapped_reasons.pl
@@ -116,10 +116,10 @@ sub usage {
E.g.:
#update 2 databases
- perl update_unmapped_reasons.pl -host ecs1c -file external_dbs.txt -user ensadmin -pass secret -dbnames homo_sapiens_core_14_33 -dbnames mus_musculus_core_14_30
+ perl update_unmapped_reasons.pl -host ecs1c -file unmapped_reason.txt -user ensadmin -pass secret -dbnames homo_sapiens_core_14_33 -dbnames mus_musculus_core_14_30
#update all core databases for release 14
- perl update_unmapped_reasons.pl -host ecs2d -file external_dbs.txt -user ensadmin -pass secret -release 14
+ perl update_unmapped_reasons.pl -host ecs2d -file unmapped_reason.txt -user ensadmin -pass secret -release 14
EOF
;
--
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