Commit c158ecbc authored by Ian Longden's avatar Ian Longden
Browse files

HUGO -> HGNC. Plus refseq and entrez genes only now used. No swissprot now

parent ce88c974
......@@ -590,60 +590,73 @@ parser = GOParser
release_uri = http://www.ebi.ac.uk/GOA/RAT_release.html
data_uri = ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/RAT/gene_association.goa_rat.gz
[source HUGO::homo_sapiens]
[source HGNC::homo_sapiens]
# Used by homo_sapiens
name = HUGO
name = HGNC
download = Y
order = 30
priority = 1
prio_descr = havana
parser = HGNC_ENSGParser
release_uri =
data_uri = file:HGNC/HGNC_TO_ENSG
[source HGNC::homo_sapiens#01]
# Used by homo_sapiens
name = HGNC
download = Y
order = 51
priority = 2
prio_descr = ccds
parser = HUGO_CCDSParser
parser = HGNC_CCDSParser
release_uri =
data_uri = file:HUGO/CCDS_TO_HUGO
data_uri = file:HGNC/CCDS_TO_HGNC
[source HUGO::homo_sapiens#01]
[source HGNC::homo_sapiens#02]
# Used by homo_sapiens
name = HUGO
name = HGNC
download = Y
order = 29
priority = 3
prio_descr = refseq
parser = HUGOParser
prio_descr = entrezgene_manual
parser = HGNCParser
release_uri =
data_uri = http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=Genew+output+data&col=gd_hgnc_id&col=gd_app_sym&col=gd_app_name&col=gd_prev_sym&col=gd_aliases&col=md_prot_id&col=gd_pub_refseq_ids&col=md_eg_id&status=Approved&status=Approved+Non-Human&status_opt=3&=on&where=&order_by=gd_hgnc_id&limit=&format=text&submit=submit&.cgifields=&.cgifields=status&.cgifields=chr
data_uri = http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=Genew+output+data&col=gd_hgnc_id&col=gd_app_sym&col=gd_app_name&col=gd_prev_sym&col=gd_aliases&col=gd_pub_eg_id&col=gd_pub_refseq_ids&col=md_eg_id&col=md_eg_id&col=md_refseq_id&status=Approved&status=Approved+Non-Human&status_opt=3&=on&where=&order_by=gd_hgnc_id&limit=&format=text&submit=submit&.cgifields=&.cgifields=status&.cgifields=chr
[source HUGO::homo_sapiens#02]
# Used by homo_sapiens
name = HUGO
download = Y
[source HGNC::homo_sapiens#03]
# Used by #01
name = HGNC
download = N
order = 30
priority = 1
prio_descr = havana
parser = HUGO_ENSGParser
priority = 4
prio_descr = refseq_manual
parser = HGNC_ENSGParser
release_uri =
data_uri = file:HUGO/HUGO_TO_ENSG
data_uri = file:HGNC/HGNC_TO_ENSG
[source HUGO::homo_sapiens#03]
# used by #01 which produces HUGO refseq,uniprot and entrezgene types
name = HUGO
[source HGNC::homo_sapiens#04]
# used by #01 which produces HGNC refseq and entrezgene types
name = HGNC
download = N
order = 30
priority = 1
prio_descr = uniprot
parser = HUGO_ENSGParser
priority = 5
prio_descr = entrezgene_mapped
parser = HGNC_ENSGParser
release_uri =
data_uri = file:HUGO/HUGO_TO_ENSG
data_uri = file:HGNC/HGNC_TO_ENSG
[source HUGO::homo_sapiens#04]
# Used by #01
name = HUGO
[source HGNC::homo_sapiens#05]
# used by #01 which produces HGNC refseq and entrezgene types
name = HGNC
download = N
order = 30
priority = 1
prio_descr = entrezgene
parser = HUGO_ENSGParser
priority = 6
prio_descr = refseq_mapped
parser = HGNC_ENSGParser
release_uri =
data_uri = file:HUGO/HUGO_TO_ENSG
data_uri = file:HGNC/HGNC_TO_ENSG
[source IMGT/GENE_DB::homo_sapiens]
# Used by homo_sapiens
......@@ -2361,9 +2374,9 @@ source = Codelink::homo_sapiens
source = EntrezGene::MULTI
source = GO::homo_sapiens
source = InterproGO::MULTI
source = HUGO::homo_sapiens
source = HUGO::homo_sapiens#01
source = HUGO::homo_sapiens#02
source = HGNC::homo_sapiens
source = HGNC::homo_sapiens#01
source = HGNC::homo_sapiens#02
source = IMGT/GENE_DB::homo_sapiens
source = IPI::homo_sapiens
source = Illumina_V1::homo_sapiens
......
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