Commit c29e0f28 authored by Ian Longden's avatar Ian Longden
Browse files

possible new order for priority of HGNC

parent e4d8dcbb
......@@ -1094,7 +1094,7 @@ data_uri = script:wget=>http://www.genenames.org/cgi-bin/hgnc_downloads.c
# used by #02
name = HGNC
download = N
order = 30
order = 19
priority = 1
prio_descr = ensembl_manual
parser = HGNCParser
......@@ -1104,19 +1104,19 @@ data_uri =
[source HGNC::homo_sapiens#08]
# used by #02
name = HGNC
download = N
order = 30
download = Y
order = 18
priority = 100
prio_descr = desc_only
parser = HGNCParser
release_uri =
data_uri =
data_uri = http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=Genew+output+data&col=gd_hgnc_id&col=gd_app_sym&col=gd_app_name&col=gd_prev_sym&col=gd_aliases&col=gd_pub_eg_id&col=gd_pub_refseq_ids&col=md_eg_id&col=md_refseq_id&col=gd_pub_ensembl_id&status=Approved&status=Approved+Non-Human&status_opt=3&=on&where=&order_by=gd_hgnc_id&limit=&format=text&submit=submit&.cgifields=&.cgifields=status&.cgifields=chr
[source HGNC::homo_sapiens]
# Used by homo_sapiens
name = HGNC
download = Y
order = 30
order = 19
priority = 4
prio_descr = havana
parser = HGNC_ENSTParser
......@@ -1128,20 +1128,20 @@ data_uri = script:host=>ens-staging1,port=>3306,dbname=>homo_sapiens_vega
[source HGNC::homo_sapiens#02]
# Used by homo_sapiens
name = HGNC
download = Y
order = 29
download = N
order = 19
priority = 3
prio_descr = entrezgene_manual
parser = HGNCParser
release_uri =
data_uri = http://www.genenames.org/cgi-bin/hgnc_downloads.cgi?title=Genew+output+data&col=gd_hgnc_id&col=gd_app_sym&col=gd_app_name&col=gd_prev_sym&col=gd_aliases&col=gd_pub_eg_id&col=gd_pub_refseq_ids&col=md_eg_id&col=md_refseq_id&col=gd_pub_ensembl_id&status=Approved&status=Approved+Non-Human&status_opt=3&=on&where=&order_by=gd_hgnc_id&limit=&format=text&submit=submit&.cgifields=&.cgifields=status&.cgifields=chr
data_uri =
[source HGNC::homo_sapiens#03]
# Used by #02
name = HGNC
download = N
order = 30
order = 19
priority = 5
prio_descr = refseq_manual
parser = HGNCParser
......@@ -1152,7 +1152,7 @@ data_uri = file:HGNC/HGNC_TO_ENSG
# used by #02 which produces HGNC refseq and entrezgene types
name = HGNC
download = N
order = 30
order = 19
priority = 6
prio_descr = entrezgene_mapped
parser = HGNCParser
......@@ -1163,7 +1163,7 @@ data_uri = file:HGNC/HGNC_TO_ENSG
# used by #02 which produces HGNC refseq and entrezgene types
name = HGNC
download = N
order = 30
order = 19
priority = 7
prio_descr = refseq_mapped
parser = HGNCParser
......@@ -1618,7 +1618,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_other/sequenc
# Used by homo_sapiens
name = RefSeq_dna
download = Y
order = 25
order = 17
priority = 1
prio_descr = ccds
parser = RefSeq_CCDSParser
......@@ -1629,7 +1629,7 @@ data_uri = script:host=>ens-livemirror,dbname=>ccds_human,
# Used by homo_sapiens
name = RefSeq_dna
download = Y
order = 20
order = 15
priority = 2
prio_descr = refseq
parser = RefSeqParser
......@@ -1640,7 +1640,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.rna.fn
# Used by mus_musculus
name = RefSeq_dna
download = Y
order = 20
order = 15
priority = 2
prio_descr = refseq
parser = RefSeqParser
......@@ -1651,7 +1651,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/refseq/M_musculus/mRNA_Prot/mouse.rna.f
# Used by mus_musculus
name = RefSeq_dna
download = Y
order = 25
order = 17
priority = 1
prio_descr = ccds
parser = RefSeq_CCDSParser
......@@ -1816,7 +1816,7 @@ data_uri = ftp://ftp.ncbi.nih.gov/genomes/Gallus_gallus/protein/protein.g
# Used by homo_sapiens
name = RefSeq_peptide
download = Y
order = 20
order = 15
priority = 1
prio_descr =
parser = RefSeqGPFFParser
......@@ -3371,7 +3371,7 @@ source = HPA::homo_sapiens
source = InterproGO::MULTI
source = HGNC::homo_sapiens
source = HGNC::homo_sapiens#01
source = HGNC::homo_sapiens#02
source = HGNC::homo_sapiens#08
source = IMGT/GENE_DB::homo_sapiens
source = IPI::homo_sapiens
source = Interpro::MULTI
......
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