From c2e391cdccd1a0a4cbaabc25e4a51d542c6dc950 Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Thu, 28 Jul 2005 12:11:02 +0000
Subject: [PATCH] regulatory_feature_object now has influence column as well
---
misc-scripts/regulatory_regions/load_regulatory.pl | 3 +++
1 file changed, 3 insertions(+)
diff --git a/misc-scripts/regulatory_regions/load_regulatory.pl b/misc-scripts/regulatory_regions/load_regulatory.pl
index fb1c7fc2dc..857a5b2e40 100755
--- a/misc-scripts/regulatory_regions/load_regulatory.pl
+++ b/misc-scripts/regulatory_regions/load_regulatory.pl
@@ -125,8 +125,10 @@ while (<FILE>) {
# for miRNA_target (and possibly others) where individual features don't
# have a unique name, create a composite one. Also set influence for each type.
my $feature_name;
+ my $influence;
if ($feature =~ /miRNA_target/i) {
$feature_name = $id .":" . $seq;
+ $influence = "negative";
}
print STDERR "No feature name for $seq of type $feature on $id.\n" if (!$feature_name);
@@ -149,6 +151,7 @@ while (<FILE>) {
$rr_obj_sth->execute($rr_id,
$ensembl_type,
$ensembl_object->dbID(),
+ $influence,
""); # no evidence yet
$count++;
--
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