Commit c3bea4da authored by nwillhoft's avatar nwillhoft
Browse files

Add schema patch to update release version to 106

parent 28987e60
Pipeline #165109 failed with stage
in 27 minutes and 20 seconds
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-- Created by SQL::Translator::Producer::SQLite
-- Created on Thu Jan 14 21:50:40 2021
-- Created on Mon Jun 14 15:19:00 2021
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......@@ -39,7 +39,7 @@
95 \N patch patch_83_84_c.sql|protein_feature_unique
96 \N patch patch_83_84_d.sql|longer_synonym
1 \N schema_type core
2 \N schema_version 105
2 \N schema_version 106
8 1 assembly.accession GCA_000292705.1
10 1 assembly.date 2012-08
7 1 assembly.default GCA_000292705.1
......@@ -141,3 +141,4 @@
141 \N patch patch_102_103_a.sql|schema_version
142 \N patch patch_103_104_a.sql|schema_version
143 \N patch patch_104_105_a.sql|schema_version
144 \N patch patch_105_106_a.sql|schema_version
......@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=144 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=145 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
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-- Created on Thu Jan 14 22:08:41 2021
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1 \N schema_version 105
1 \N schema_version 106
2 1 assembly.default NCBI34
3 1 species.taxonomy_id 9606
26 1 species.classification Homo sapiens
......@@ -124,3 +124,4 @@
198 1 assembly.provider_name
199 1 assembly.provider_url
200 \N patch patch_104_105_a.sql|schema_version
201 \N patch patch_105_106_a.sql|schema_version
......@@ -103,7 +103,7 @@ CREATE TABLE `attrib_type` (
`description` text COLLATE latin1_bin,
PRIMARY KEY (`attrib_type_id`),
UNIQUE KEY `code_idx` (`code`)
) ENGINE=MyISAM AUTO_INCREMENT=394 DEFAULT CHARSET=latin1 COLLATE=latin1_bin;
) ENGINE=MyISAM AUTO_INCREMENT=536 DEFAULT CHARSET=latin1 COLLATE=latin1_bin;
CREATE TABLE `biotype` (
`biotype_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=201 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=202 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......@@ -760,7 +760,7 @@ CREATE TABLE `seq_region` (
PRIMARY KEY (`seq_region_id`),
UNIQUE KEY `name_cs_idx` (`name`,`coord_system_id`),
KEY `cs_idx` (`coord_system_id`)
) ENGINE=MyISAM AUTO_INCREMENT=965915 DEFAULT CHARSET=latin1 COLLATE=latin1_bin;
) ENGINE=MyISAM AUTO_INCREMENT=1069295 DEFAULT CHARSET=latin1 COLLATE=latin1_bin;
CREATE TABLE `seq_region_attrib` (
`seq_region_id` int(10) unsigned NOT NULL DEFAULT '0',
......
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-- Created on Thu Jan 14 22:26:16 2021
-- Created on Mon Jun 14 15:22:16 2021
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1 \N schema_version 105
1 \N schema_version 106
2 1 assembly.default NCBI34
33 1 species.classification Chordata
32 1 species.classification Vertebrata
......@@ -120,3 +120,4 @@
169 \N patch patch_102_103_a.sql|schema_version
170 \N patch patch_103_104_a.sql|schema_version
171 \N patch patch_104_105_a.sql|schema_version
172 \N patch patch_105_106_a.sql|schema_version
......@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=172 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=173 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
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1 \N schema_version 105
1 \N schema_version 106
2014 1 species.classification Haplorrhini
40 1 assembly.default GRCh37
41 1 assembly.date 2009-02
......@@ -125,3 +125,4 @@
2132 \N patch patch_102_103_a.sql|schema_version
2133 \N patch patch_103_104_a.sql|schema_version
2134 \N patch patch_104_105_a.sql|schema_version
2135 \N patch patch_105_106_a.sql|schema_version
......@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=2135 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=2136 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
......@@ -58,3 +58,4 @@
58 \N patch patch_102_103_a.sql|schema version
59 \N patch patch_103_104_a.sql|schema version
60 \N patch patch_104_105_a.sql|schema_version
61 \N patch patch_104_105_b.sql|Increase publication title size
......@@ -186,7 +186,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=61 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=62 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) NOT NULL,
......@@ -325,7 +325,7 @@ CREATE TABLE `protein_function_predictions_attrib` (
CREATE TABLE `publication` (
`publication_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
`title` varchar(300) DEFAULT NULL,
`title` varchar(400) DEFAULT NULL,
`authors` varchar(255) CHARACTER SET latin2 DEFAULT NULL,
`pmid` int(10) DEFAULT NULL,
`pmcid` varchar(255) DEFAULT NULL,
......
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-- Created on Thu Jan 14 22:59:44 2021
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1 \N schema_version 105
1 \N schema_version 106
2 1 assembly.default MULTIMAP
3 1 species.taxonomy_id 1
4 1 assembly.mapping chromosome:MULTIMAP#contig
......@@ -81,3 +81,4 @@
174 \N patch patch_102_103_a.sql|schema_version
175 \N patch patch_103_104_a.sql|schema_version
176 \N patch patch_104_105_a.sql|schema_version
177 \N patch patch_105_106_a.sql|schema_version
......@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=177 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=178 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
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-- Created on Mon Feb 1 11:07:01 2021
-- Created on Mon Jun 14 15:26:43 2021
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-- Created on Thu Jan 14 23:28:17 2021
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