From c69cb0d18f9ff4e6e73b41a22303b394f5cc9ca0 Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Thu, 30 Jun 2011 12:54:42 +0000
Subject: [PATCH] allow passing of to_slice but is ignored, needed to match
other map calls
---
modules/Bio/EnsEMBL/AssemblyMapper.pm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/modules/Bio/EnsEMBL/AssemblyMapper.pm b/modules/Bio/EnsEMBL/AssemblyMapper.pm
index 5bc2077404..adf3ea7847 100644
--- a/modules/Bio/EnsEMBL/AssemblyMapper.pm
+++ b/modules/Bio/EnsEMBL/AssemblyMapper.pm
@@ -209,10 +209,10 @@ sub register_all {
=cut
sub map {
- throw('Incorrect number of arguments.') if ( @_ != 6 );
+ throw('Incorrect number of arguments.') if (!( @_ >= 6));
my ( $self, $frm_seq_region_name, $frm_start, $frm_end, $frm_strand,
- $frm_cs )
+ $frm_cs, $to_slice )
= @_;
my $mapper = $self->{'mapper'};
@@ -221,6 +221,7 @@ sub map {
my $adaptor = $self->{'adaptor'};
my $frm;
+
my $seq_region_id =
$self->adaptor()
->seq_regions_to_ids( $frm_cs, [$frm_seq_region_name] )->[0];
--
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