From c6de5f2286a33def987a8df4909f6ddf98eca7e9 Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Tue, 20 Mar 2007 15:47:11 +0000
Subject: [PATCH] triage stuff moved to the end
---
misc-scripts/xref_mapping/xref_mapper.pl | 11 ++++++++++-
1 file changed, 10 insertions(+), 1 deletion(-)
diff --git a/misc-scripts/xref_mapping/xref_mapper.pl b/misc-scripts/xref_mapping/xref_mapper.pl
index bd7ac92c4b..d2d0c3b117 100644
--- a/misc-scripts/xref_mapping/xref_mapper.pl
+++ b/misc-scripts/xref_mapping/xref_mapper.pl
@@ -348,7 +348,7 @@ if(defined($recalc_display_xrefs)){
exit;
}
-print "\nDumping xref & Ensembl sequences\n";
+#print "\nDumping xref & Ensembl sequences\n";
$mapper->dump_seqs($location);
@@ -375,6 +375,14 @@ if($upload){
print "\nChecking pair data\n";
$mapper->add_missing_pairs();
+
+ if($notriage){
+ $mapper->dump_xref_with_no_triage_data();
+ }
+ else{
+ $mapper->dump_triage_data();
+ }
+
if(!defined($notriage)){
print "\nPriority unmapped xrefs sorting\n";
$mapper->unmapped_data_for_prioritys();
@@ -383,6 +391,7 @@ if($upload){
$mapper->write_dependent_unmapped_objects();
}
+
print "\nChecking xrefs\n";
$mapper->cleanup_database();
--
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