From c77e76d8abadd2705a6fd12cc8469b81ae8aa0ef Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Sat, 24 Mar 2007 11:58:08 +0000
Subject: [PATCH] Wait for human-mouse to finish before running mouse-human.
May prevent table contention.
---
misc-scripts/xref_projection/submit_projections.pl | 10 +++-------
1 file changed, 3 insertions(+), 7 deletions(-)
diff --git a/misc-scripts/xref_projection/submit_projections.pl b/misc-scripts/xref_projection/submit_projections.pl
index 17aa56ce4d..725dc513d0 100644
--- a/misc-scripts/xref_projection/submit_projections.pl
+++ b/misc-scripts/xref_projection/submit_projections.pl
@@ -70,7 +70,7 @@ $e = "$dir/go_drosophila_anopheles.err";
$n = "g_dros_ano";
system "bsub -o $o -e $e -J $n perl project_display_xrefs.pl $opts -from drosophila -to anopheles -go_terms -delete_go_terms";
-# ----------------------------------------------------------------------
+# ----------------------------------------
# GO terms - mouse to human, rat, dog, chicken, cow
# Have to use job dependencies since these jobs need to run after the corresponding human-X projections have
@@ -79,12 +79,8 @@ foreach my $to ("human", "rat", "dog", "chicken", "cow") {
$o = "$dir/go_mouse_$to.out";
$e = "$dir/go_mouse_$to.err";
$n = substr("g_mou_$to", 0, 10);
- my $d;
- if ($to eq "human") { # don't need to wait for mouse-human
- $d = '';
- } else {
- my $depend_job_name = substr("g_hum_$to", 0, 10);
- $d = "-w 'done($depend_job_name)'";
+ my $depend_job_name = substr("g_hum_$to", 0, 10);
+ my $d = "-w 'done($depend_job_name)'";
}
system "bsub -o $o -e $e -J $n $d perl project_display_xrefs.pl $opts -from mouse -to $to -go_terms";
}
--
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