From c7c7a24aadaf20c5de70cc565abba8cbfa0828c7 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andreas=20Kusalananda=20K=C3=A4h=C3=A4ri?=
<ak4@sanger.ac.uk>
Date: Mon, 1 Jun 2009 13:41:24 +0000
Subject: [PATCH] Enable the is_constitutive column in the exon table.
---
modules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm
index c1f9e15051..40b3d156c4 100644
--- a/modules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm
@@ -92,7 +92,7 @@ sub _columns {
return (
'e.exon_id', 'e.seq_region_id', 'e.seq_region_start',
'e.seq_region_end', 'e.seq_region_strand', 'e.phase',
- 'e.end_phase', 'e.is_current', ###FIXME 'e.is_constitutive',
+ 'e.end_phase', 'e.is_current', 'e.is_constitutive',
'esi.stable_id', 'esi.version', $created_date,
$modified_date
);
@@ -270,8 +270,8 @@ sub store {
my $exon_sql = q{
INSERT into exon ( seq_region_id, seq_region_start,
seq_region_end, seq_region_strand, phase,
- end_phase, is_current ) -- FIXME , is_constitutive )
- VALUES ( ?, ?, ?, ?, ?, ?, ? )
+ end_phase, is_current, is_constitutive )
+ VALUES ( ?,?,?,?,?,?,?,? )
};
my $exonst = $self->prepare($exon_sql);
@@ -290,7 +290,7 @@ sub store {
$exonst->bind_param( 5, $exon->phase, SQL_TINYINT );
$exonst->bind_param( 6, $exon->end_phase, SQL_TINYINT );
$exonst->bind_param( 7, $is_current, SQL_TINYINT );
- ###FIXME $exonst->bind_param( 8, $is_constitutive, SQL_TINYINT );
+ $exonst->bind_param( 8, $is_constitutive, SQL_TINYINT );
$exonst->execute();
$exonId = $exonst->{'mysql_insertid'};
@@ -527,7 +527,7 @@ sub _objs_from_sth {
$sth->bind_columns(
\$exon_id, \$seq_region_id, \$seq_region_start,
\$seq_region_end, \$seq_region_strand, \$phase,
- \$end_phase, \$is_current, ###FIXME \$is_constitutive,
+ \$end_phase, \$is_current, \$is_constitutive,
\$stable_id, \$version, \$created_date,
\$modified_date
);
--
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