From c816310a54cfcf68c59eb845a4f66c25380f5854 Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Tue, 11 Apr 2006 15:54:24 +0000
Subject: [PATCH] Correctly fill in info_type and info_text to display_xref
---
modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm | 15 +++++++++------
1 file changed, 9 insertions(+), 6 deletions(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm
index f988116145..485acb06b3 100644
--- a/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm
@@ -102,10 +102,11 @@ sub _columns {
my $modified_date = $self->db->dbc->from_date_to_seconds("modified_date");
return ( 't.transcript_id', 't.seq_region_id', 't.seq_region_start', 't.seq_region_end',
- 't.seq_region_strand', 't.analysis_id', 't.gene_id',
- 't.display_xref_id', 'tsi.stable_id','tsi.version', $created_date,
- $modified_date, 't.description', 't.biotype', 't.status',
- 'x.display_label', 'exdb.db_name' ,'exdb.status', 'exdb.db_display_name');
+ 't.seq_region_strand', 't.analysis_id', 't.gene_id',
+ 't.display_xref_id', 'tsi.stable_id','tsi.version', $created_date,
+ $modified_date, 't.description', 't.biotype', 't.status',
+ 'x.display_label', 'exdb.db_name' ,'exdb.status', 'exdb.db_display_name',
+ 'x.info_type', 'x.info_text');
}
@@ -1119,14 +1120,16 @@ sub _objs_from_sth {
$seq_region_strand, $analysis_id, $gene_id,
$display_xref_id, $stable_id, $version, $created_date, $modified_date,
$description, $biotype, $status,
- $external_name, $external_db, $external_status, $external_db_name );
+ $external_name, $external_db, $external_status, $external_db_name,
+ $info_type, $info_text);
$sth->bind_columns( \$transcript_id, \$seq_region_id, \$seq_region_start,
\$seq_region_end, \$seq_region_strand, \$analysis_id,
\$gene_id, \$display_xref_id, \$stable_id, \$version,
\$created_date, \$modified_date,
\$description, \$biotype, \$status,
- \$external_name, \$external_db, \$external_status, \$external_db_name );
+ \$external_name, \$external_db, \$external_status, \$external_db_name,
+ \$info_type, \$info_text);
my $asm_cs;
my $cmp_cs;
--
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