Commit c8bda6e4 authored by Arnaud Kerhornou's avatar Arnaud Kerhornou
Browse files

Added a new set of Gramene specific soruces for Athaliana

parent e1dd9393
......@@ -3981,6 +3981,110 @@ parser = VBribosomalParser
release_uri =
data_uri = file:Ribosomal_Protein_Gene_Database/RPG_Anopheles_gambiae_PEST.txt
[source Gramene_Pathway::arabidopsis_thaliana]
# Used by Arabidopsis thaliana, Gramene-specific
name = Gramene_Pathway
download = Y
order = 50
priority = 1
prio_descr =
parser = GramenePathwayParser
release_uri =
data_uri = file:/nfs/panda/ensemblgenomes/development/kclark/xrefs_pipeline/data/pathways/ara.tab
[source PO_GROW::arabidopsis_thaliana]
# Used by Arabidopsis thaliana, Gramene-specific
name = PO
download = Y
order = 85
priority = 1
prio_descr = main
dependent_on = TAIR_TRANSLATION
parser = TAIROntologyParser
release_uri =
data_uri = http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/OBO_format/plant_ontology.obo?view=co
data_uri = ftp://ftp.arabidopsis.org/home/tair/Ontologies/Plant_Ontology/po_temporal_gene_arabidopsis_tair.assoc
[source PO_STRU::arabidopsis_thaliana]
# Used by Arabidopsis thaliana, Gramene-specific
name = PO
download = Y
order = 85
priority = 1
prio_descr = main
dependent_on = TAIR_TRANSLATION
parser = TAIROntologyParser
release_uri =
data_uri = http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/OBO_format/plant_ontology.obo?view=co
data_uri = ftp://ftp.arabidopsis.org/home/tair/Ontologies/Plant_Ontology/po_anatomy_gene_arabidopsis_tair.assoc
[source TAIR_LOCUS::arabidopsis_thaliana]
# Used by arabidopsis_thaliana
name = TAIR_LOCUS
download = Y
order = 1
priority = 1
prio_descr =
parser = TAIRIDParser
release_uri =
data_uri = ftp://ftp.arabidopsis.org/Sequences/blast_datasets/TAIR10_blastsets/TAIR10_cdna_20101214_updated
[source TAIR_LOCUS_MODEL::arabidopsis_thaliana]
# Used by arabidopsis_thaliana
name = TAIR_LOCUS_MODEL
download = N
order = 1
priority = 1
prio_descr =
parser = TAIRIDParser
release_uri =
data_uri =
[source TAIR_SYMBOL::arabidopsis_thaliana]
# Used by arabidopsis_thaliana
name = TAIR_SYMBOL
download = N
order = 1
priority = 1
prio_descr =
parser = TAIRIDParser
release_uri =
data_uri =
[source TAIR_TRANSLATION::arabidopsis_thaliana]
# Used by arabidopsis_thaliana
name = TAIR_TRANSLATION
download = N
order = 1
priority = 1
prio_descr =
parser =
release_uri =
data_uri =
[source NASC_GENE_ID::arabidopsis_thaliana]
# Used by arabidopsis_thaliana
name = NASC_GENE_ID
download = N
order = 1
priority = 1
prio_descr =
parser = TAIRIDParser
release_uri =
data_uri =
[source CommunityGO::arabidopsis_thaliana]
# Used by Arabidopsis thaliana, Gramene-specific
name = GO
download = Y
order = 85
priority = 1
prio_descr = main
dependent_on = TAIR_TRANSLATION
parser = TAIROntologyParser
release_uri =
data_uri = http://archive.geneontology.org/latest-termdb/go_daily-termdb.obo-xml.gz
data_uri = ftp://ftp.geneontology.org/pub/go/gene-associations/gene_association.tair.gz
......@@ -6409,7 +6513,7 @@ taxonomy_id = 3702
aliases = Arabidopsis thaliana,athaliana,arabidopsisthaliana,thale cress,thale-cress,mouse-ear cress
source = ArrayExpress::EG
source = EntrezGene::MULTI
source = GO::MULTI
#source = GO::MULTI
source = goslim_goa::EG
source = Interpro::MULTI
source = InterproGO::MULTI
......@@ -6420,6 +6524,11 @@ source = UniGene::arabidopsis_thaliana
source = UniParc::MULTI
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
source = Gramene_Pathway::arabidopsis_thaliana
source = TAIR_LOCUS::arabidopsis_thaliana
source = CommunityGO::arabidopsis_thaliana
source = PO_GROW::arabidopsis_thaliana
source = PO_STRU::arabidopsis_thaliana
[species brachypodium_distachyon]
taxonomy_id = 15368
......
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