From c9a6f9874300b1bfffd52d151f7faa6ae0fef33f Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Wed, 19 Dec 2012 15:43:09 +0000
Subject: [PATCH] not all species have a common name, use production_name as a
key instead
---
.../production_database/scripts/populate_species_meta.pl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/misc-scripts/production_database/scripts/populate_species_meta.pl b/misc-scripts/production_database/scripts/populate_species_meta.pl
index 745cd02005..ea9bd9761f 100644
--- a/misc-scripts/production_database/scripts/populate_species_meta.pl
+++ b/misc-scripts/production_database/scripts/populate_species_meta.pl
@@ -172,7 +172,7 @@ sub _production {
my $sql = 'select common_name, web_name, scientific_name, production_name, url_name, taxon, species_prefix from species where taxon =?';
my $hash_ref = $self->_query_production($sql,$taxon);
- if (!exists $hash_ref->{'species.common_name'}) {
+ if (!exists $hash_ref->{'species.production_name'}) {
warning("Failed to find original taxon id for $db. Attempting to obtain by DB name instead");
my $db_name = $db;
# regex chops tail end off core-like databases. This must be extended if new naming schemes are used.
--
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