Commit ca892b40 authored by Matthieu Muffato's avatar Matthieu Muffato
Browse files

Patched the Variation test-databases

parent 145b2140
1 \N schema_type variation
2 \N schema_version 85
3 \N patch patch_83_84_a.sql|schema version
4 \N patch patch_84_85_a.sql|schema version
5 \N patch patch_84_85_b.sql|create sample_synonym
6 \N patch patch_84_85_c.sql|drop column moltype from variation_synonym
7 \N patch patch_85_86_d.sql|Making attrib_id auto_increment
8 \N patch patch_85_86_e.sql|drop the table tagged_variation_feature
9 \N patch patch_84_85_d.sql|Making attrib_id auto_increment
2 \N schema_version 88
3 \N patch patch_84_85_a.sql|schema version
4 \N patch patch_84_85_b.sql|create sample_synonym
5 \N patch patch_84_85_c.sql|drop column moltype from variation_synonym
6 \N patch patch_84_85_d.sql|Making attrib_id auto_increment
7 \N patch patch_84_85_e.sql|drop the table tagged_variation_feature
8 \N patch patch_84_85_f.sql|add phenotype_ontology_accession
9 \N patch patch_84_85_g.sql|allow the column description to store more text in the source table
10 \N patch patch_84_85_e.sql|drop the table tagged_variation_feature
11 \N patch patch_84_85_f.sql|add phenotype_ontology_accession
12 \N patch patch_84_85_g.sql|allow the column description to store more text in the source table
13 \N patch patch_85_86_a.sql|schema version
14 \N patch patch_85_86_b.sql|add qualifier & index to phenotype_onology_accession
15 \N patch patch_85_86_c.sql|add index on study.external_reference
16 \N patch patch_86_87_a.sql|schema version
17 \N patch patch_87_88_a.sql|schema version
18 \N patch patch_87_88_b.sql|seq_region_name_255
1 \N schema_type variation
2 \N schema_version 86
2 \N schema_version 88
6 1 species.production_name mus_musculus
15 1 web_config sv_study#Keane 2011 (DGVa study estd118)#Keane 2011#estd118
14 1 web_config set#All failed variants#All failed variants#variation_set_fail_all#failed
......@@ -40,3 +40,6 @@
46 \N patch patch_85_86_a.sql|schema version
47 \N patch patch_85_86_b.sql|add qualifier & index to phenotype_onology_accession
48 \N patch patch_85_86_c.sql|add index on study.external_reference
49 \N patch patch_86_87_a.sql|schema version
50 \N patch patch_87_88_a.sql|schema version
51 \N patch patch_87_88_b.sql|seq_region_name_255
......@@ -168,7 +168,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=49 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=52 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) NOT NULL,
......@@ -385,7 +385,7 @@ CREATE TABLE `sample_synonym` (
CREATE TABLE `seq_region` (
`seq_region_id` int(10) unsigned NOT NULL,
`name` varchar(40) NOT NULL,
`name` varchar(255) NOT NULL,
`coord_system_id` int(10) unsigned NOT NULL,
PRIMARY KEY (`seq_region_id`),
UNIQUE KEY `name_cs_idx` (`name`,`coord_system_id`),
......
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