From cc7ba66d7ceb7d145048f38a648f78bc6e37280a Mon Sep 17 00:00:00 2001
From: Andrew Yates <ayates@ebi.ac.uk>
Date: Wed, 11 Jan 2012 11:35:28 +0000
Subject: [PATCH] Adding an option to specify a non standard tmp location
---
misc-scripts/CopyDBoverServer.pl | 20 +++++++++++++++++---
1 file changed, 17 insertions(+), 3 deletions(-)
diff --git a/misc-scripts/CopyDBoverServer.pl b/misc-scripts/CopyDBoverServer.pl
index a84f26cd59..f156343a46 100755
--- a/misc-scripts/CopyDBoverServer.pl
+++ b/misc-scripts/CopyDBoverServer.pl
@@ -106,6 +106,11 @@ Command line switches:
(Optional)
Copy all tables except the ones specified in the
comma-delimited list.
+
+ --tmpdir=TMP (Optional)
+ Allows for a non-standard tmp location to be used during
+ the copy process. Normally it will create a directory
+ called tmp in the directory above the target data dir.
--help (Optional)
Displays this text.
@@ -164,6 +169,7 @@ my $opt_optimize = 1; # Optimize the tables by default.
my $opt_force = 0; # Do not reuse existing staging directory by default.
my $opt_skip_views = 0; # Process views by default
my $opt_innodb = 1; # Don't skip InnoDB by default
+my $opt_tmp_dir;
if ( !GetOptions( 'pass=s' => \$opt_password,
'flush!' => \$opt_flush,
@@ -174,6 +180,7 @@ if ( !GetOptions( 'pass=s' => \$opt_password,
'skip_tables=s' => \$opt_skip_tables,
'innodb!' => \$opt_innodb,
'skip_views!' => \$opt_skip_views,
+ 'tmp_dir=s' => \$opt_tmp_dir,
'help' => \$opt_help )
|| ( !defined($opt_password) && !defined($opt_help) ) )
{
@@ -416,12 +423,19 @@ foreach my $spec (@todo) {
$source_dbh->disconnect();
next;
}
+
+ my $tmp_dir;
+ if($opt_tmp_dir) {
+ $tmp_dir = $opt_tmp_dir;
+ }
+ else {
+ $tmp_dir = canonpath( catdir( $target_dir, updir(), 'tmp' ) );
+ }
printf( "SOURCE 'datadir' = '%s'\n", $source_dir );
printf( "TARGET 'datadir' = '%s'\n", $target_dir );
-
- my $tmp_dir = canonpath( catdir( $target_dir, updir(), 'tmp' ) );
-
+ printf("TMPDIR = %s\n", $tmp_dir);
+
my $staging_dir = catdir( $tmp_dir, sprintf( "tmp.%s", $target_db ) );
my $destination_dir = catdir( $target_dir, $target_db );
--
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