From ce31a6c95d6b244b20620ca1433c0855a127b158 Mon Sep 17 00:00:00 2001
From: Tiago Grego <tgrego@ebi.ac.uk>
Date: Tue, 17 Dec 2019 13:13:20 +0000
Subject: [PATCH] patch core test dbs with patch_99_100_c.sql
---
modules/t/test-genome-DBs/circ/core/SQLite/table.sql | 6 +++---
modules/t/test-genome-DBs/circ/core/meta.txt | 1 +
modules/t/test-genome-DBs/circ/core/table.sql | 6 +++---
.../t/test-genome-DBs/homo_sapiens/core/SQLite/table.sql | 6 +++---
modules/t/test-genome-DBs/homo_sapiens/core/meta.txt | 1 +
modules/t/test-genome-DBs/homo_sapiens/core/table.sql | 6 +++---
.../t/test-genome-DBs/homo_sapiens/empty/SQLite/table.sql | 2 +-
.../t/test-genome-DBs/homo_sapiens/patch/SQLite/table.sql | 2 +-
.../t/test-genome-DBs/homo_sapiens/xref/SQLite/table.sql | 2 +-
modules/t/test-genome-DBs/mapping/core/SQLite/table.sql | 6 +++---
modules/t/test-genome-DBs/mapping/core/meta.txt | 1 +
modules/t/test-genome-DBs/mapping/core/table.sql | 6 +++---
modules/t/test-genome-DBs/multi/compara/SQLite/table.sql | 6 +++---
.../t/test-genome-DBs/mus_musculus/core/SQLite/table.sql | 6 +++---
modules/t/test-genome-DBs/mus_musculus/core/meta.txt | 1 +
modules/t/test-genome-DBs/mus_musculus/core/table.sql | 6 +++---
modules/t/test-genome-DBs/nameless/core/SQLite/table.sql | 6 +++---
modules/t/test-genome-DBs/nameless/core/meta.txt | 1 +
modules/t/test-genome-DBs/nameless/core/table.sql | 6 +++---
.../t/test-genome-DBs/ontology/ontology/SQLite/table.sql | 2 +-
modules/t/test-genome-DBs/polyploidy/core/SQLite/table.sql | 6 +++---
modules/t/test-genome-DBs/polyploidy/core/meta.txt | 1 +
modules/t/test-genome-DBs/polyploidy/core/table.sql | 6 +++---
.../t/test-genome-DBs/test_collection/core/SQLite/table.sql | 6 +++---
modules/t/test-genome-DBs/test_collection/core/meta.txt | 1 +
modules/t/test-genome-DBs/test_collection/core/table.sql | 6 +++---
26 files changed, 56 insertions(+), 49 deletions(-)
diff --git a/modules/t/test-genome-DBs/circ/core/SQLite/table.sql b/modules/t/test-genome-DBs/circ/core/SQLite/table.sql
index d2294cc8f0..39bfa99968 100644
--- a/modules/t/test-genome-DBs/circ/core/SQLite/table.sql
+++ b/modules/t/test-genome-DBs/circ/core/SQLite/table.sql
@@ -1,6 +1,6 @@
--
-- Created by SQL::Translator::Producer::SQLite
--- Created on Wed Nov 6 10:35:32 2019
+-- Created on Tue Dec 17 13:11:32 2019
--
BEGIN TRANSACTION;
@@ -476,8 +476,8 @@ CREATE TABLE "mapping_session" (
"new_db_name" varchar(80) NOT NULL DEFAULT '',
"old_release" varchar(5) NOT NULL DEFAULT '',
"new_release" varchar(5) NOT NULL DEFAULT '',
- "old_assembly" varchar(20) NOT NULL DEFAULT '',
- "new_assembly" varchar(20) NOT NULL DEFAULT '',
+ "old_assembly" varchar(80) NOT NULL DEFAULT '',
+ "new_assembly" varchar(80) NOT NULL DEFAULT '',
"created" datetime
);
diff --git a/modules/t/test-genome-DBs/circ/core/meta.txt b/modules/t/test-genome-DBs/circ/core/meta.txt
index 3431426619..975a3cc873 100644
--- a/modules/t/test-genome-DBs/circ/core/meta.txt
+++ b/modules/t/test-genome-DBs/circ/core/meta.txt
@@ -135,3 +135,4 @@
135 \N patch patch_98_99_a.sql|schema_version
136 \N patch patch_99_100_a.sql|schema_version
137 \N patch patch_99_100_b.sql|alter_externaldb_type_notnull
+138 \N patch patch_99_100_c.sql|alter_mapping_session_assembly_length
diff --git a/modules/t/test-genome-DBs/circ/core/table.sql b/modules/t/test-genome-DBs/circ/core/table.sql
index 8866da31b7..451ee7687f 100644
--- a/modules/t/test-genome-DBs/circ/core/table.sql
+++ b/modules/t/test-genome-DBs/circ/core/table.sql
@@ -420,8 +420,8 @@ CREATE TABLE `mapping_session` (
`new_db_name` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`old_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
`new_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
- `old_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
- `new_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `old_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `new_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`created` datetime DEFAULT NULL,
PRIMARY KEY (`mapping_session_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1 COLLATE=latin1_bin;
@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=138 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=139 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
diff --git a/modules/t/test-genome-DBs/homo_sapiens/core/SQLite/table.sql b/modules/t/test-genome-DBs/homo_sapiens/core/SQLite/table.sql
index 310b523dd0..9e12d2470a 100644
--- a/modules/t/test-genome-DBs/homo_sapiens/core/SQLite/table.sql
+++ b/modules/t/test-genome-DBs/homo_sapiens/core/SQLite/table.sql
@@ -1,6 +1,6 @@
--
-- Created by SQL::Translator::Producer::SQLite
--- Created on Wed Nov 6 10:35:37 2019
+-- Created on Tue Dec 17 13:11:36 2019
--
BEGIN TRANSACTION;
@@ -476,8 +476,8 @@ CREATE TABLE "mapping_session" (
"new_db_name" varchar(80) NOT NULL DEFAULT '',
"old_release" varchar(5) NOT NULL DEFAULT '',
"new_release" varchar(5) NOT NULL DEFAULT '',
- "old_assembly" varchar(20) NOT NULL DEFAULT '',
- "new_assembly" varchar(20) NOT NULL DEFAULT '',
+ "old_assembly" varchar(80) NOT NULL DEFAULT '',
+ "new_assembly" varchar(80) NOT NULL DEFAULT '',
"created" datetime
);
diff --git a/modules/t/test-genome-DBs/homo_sapiens/core/meta.txt b/modules/t/test-genome-DBs/homo_sapiens/core/meta.txt
index b538bbe41f..9450cc1570 100644
--- a/modules/t/test-genome-DBs/homo_sapiens/core/meta.txt
+++ b/modules/t/test-genome-DBs/homo_sapiens/core/meta.txt
@@ -114,3 +114,4 @@
188 \N patch patch_98_99_a.sql|schema_version
189 \N patch patch_99_100_a.sql|schema_version
190 \N patch patch_99_100_b.sql|alter_externaldb_type_notnull
+191 \N patch patch_99_100_c.sql|alter_mapping_session_assembly_length
diff --git a/modules/t/test-genome-DBs/homo_sapiens/core/table.sql b/modules/t/test-genome-DBs/homo_sapiens/core/table.sql
index 60863488cb..cca5f6597e 100644
--- a/modules/t/test-genome-DBs/homo_sapiens/core/table.sql
+++ b/modules/t/test-genome-DBs/homo_sapiens/core/table.sql
@@ -420,8 +420,8 @@ CREATE TABLE `mapping_session` (
`new_db_name` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`old_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
`new_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
- `old_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
- `new_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `old_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `new_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`created` datetime DEFAULT NULL,
PRIMARY KEY (`mapping_session_id`)
) ENGINE=MyISAM AUTO_INCREMENT=4 DEFAULT CHARSET=latin1 COLLATE=latin1_bin;
@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=191 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=192 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
diff --git a/modules/t/test-genome-DBs/homo_sapiens/empty/SQLite/table.sql b/modules/t/test-genome-DBs/homo_sapiens/empty/SQLite/table.sql
index 16497890a2..a227bd6878 100644
--- a/modules/t/test-genome-DBs/homo_sapiens/empty/SQLite/table.sql
+++ b/modules/t/test-genome-DBs/homo_sapiens/empty/SQLite/table.sql
@@ -1,6 +1,6 @@
--
-- Created by SQL::Translator::Producer::SQLite
--- Created on Wed Nov 6 10:35:42 2019
+-- Created on Tue Dec 17 13:11:39 2019
--
BEGIN TRANSACTION;
diff --git a/modules/t/test-genome-DBs/homo_sapiens/patch/SQLite/table.sql b/modules/t/test-genome-DBs/homo_sapiens/patch/SQLite/table.sql
index 46593d23ec..f0c16de07b 100644
--- a/modules/t/test-genome-DBs/homo_sapiens/patch/SQLite/table.sql
+++ b/modules/t/test-genome-DBs/homo_sapiens/patch/SQLite/table.sql
@@ -1,6 +1,6 @@
--
-- Created by SQL::Translator::Producer::SQLite
--- Created on Wed Nov 6 10:35:48 2019
+-- Created on Tue Dec 17 13:11:42 2019
--
BEGIN TRANSACTION;
diff --git a/modules/t/test-genome-DBs/homo_sapiens/xref/SQLite/table.sql b/modules/t/test-genome-DBs/homo_sapiens/xref/SQLite/table.sql
index 6fd0b874a0..cb82a4371a 100644
--- a/modules/t/test-genome-DBs/homo_sapiens/xref/SQLite/table.sql
+++ b/modules/t/test-genome-DBs/homo_sapiens/xref/SQLite/table.sql
@@ -1,6 +1,6 @@
--
-- Created by SQL::Translator::Producer::SQLite
--- Created on Wed Nov 6 10:35:49 2019
+-- Created on Tue Dec 17 13:11:43 2019
--
BEGIN TRANSACTION;
diff --git a/modules/t/test-genome-DBs/mapping/core/SQLite/table.sql b/modules/t/test-genome-DBs/mapping/core/SQLite/table.sql
index beaf999fd3..19900e6a78 100644
--- a/modules/t/test-genome-DBs/mapping/core/SQLite/table.sql
+++ b/modules/t/test-genome-DBs/mapping/core/SQLite/table.sql
@@ -1,6 +1,6 @@
--
-- Created by SQL::Translator::Producer::SQLite
--- Created on Wed Nov 6 10:35:54 2019
+-- Created on Tue Dec 17 13:11:46 2019
--
BEGIN TRANSACTION;
@@ -476,8 +476,8 @@ CREATE TABLE "mapping_session" (
"new_db_name" varchar(80) NOT NULL DEFAULT '',
"old_release" varchar(5) NOT NULL DEFAULT '',
"new_release" varchar(5) NOT NULL DEFAULT '',
- "old_assembly" varchar(20) NOT NULL DEFAULT '',
- "new_assembly" varchar(20) NOT NULL DEFAULT '',
+ "old_assembly" varchar(80) NOT NULL DEFAULT '',
+ "new_assembly" varchar(80) NOT NULL DEFAULT '',
"created" datetime
);
diff --git a/modules/t/test-genome-DBs/mapping/core/meta.txt b/modules/t/test-genome-DBs/mapping/core/meta.txt
index ee84ac3b6b..6cc475bc7d 100644
--- a/modules/t/test-genome-DBs/mapping/core/meta.txt
+++ b/modules/t/test-genome-DBs/mapping/core/meta.txt
@@ -75,3 +75,4 @@
168 \N patch patch_98_99_a.sql|schema_version
169 \N patch patch_99_100_a.sql|schema_version
170 \N patch patch_99_100_b.sql|alter_externaldb_type_notnull
+171 \N patch patch_99_100_c.sql|alter_mapping_session_assembly_length
diff --git a/modules/t/test-genome-DBs/mapping/core/table.sql b/modules/t/test-genome-DBs/mapping/core/table.sql
index ccf60eb44a..67afcddec3 100644
--- a/modules/t/test-genome-DBs/mapping/core/table.sql
+++ b/modules/t/test-genome-DBs/mapping/core/table.sql
@@ -420,8 +420,8 @@ CREATE TABLE `mapping_session` (
`new_db_name` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`old_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
`new_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
- `old_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
- `new_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `old_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `new_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`created` datetime DEFAULT NULL,
PRIMARY KEY (`mapping_session_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1 COLLATE=latin1_bin;
@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=171 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=172 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
diff --git a/modules/t/test-genome-DBs/multi/compara/SQLite/table.sql b/modules/t/test-genome-DBs/multi/compara/SQLite/table.sql
index b9ab265bdf..0da384e189 100644
--- a/modules/t/test-genome-DBs/multi/compara/SQLite/table.sql
+++ b/modules/t/test-genome-DBs/multi/compara/SQLite/table.sql
@@ -1,6 +1,6 @@
--
-- Created by SQL::Translator::Producer::SQLite
--- Created on Wed Nov 6 10:35:58 2019
+-- Created on Tue Dec 17 13:11:48 2019
--
BEGIN TRANSACTION;
@@ -384,7 +384,7 @@ CREATE TABLE "hmm_curated_annot" (
"seq_member_stable_id" varchar(40) NOT NULL,
"model_id" varchar(40),
"library_version" varchar(40) NOT NULL,
- "annot_date" timestamp NOT NULL DEFAULT 'current_timestamp()',
+ "annot_date" timestamp NOT NULL DEFAULT current_timestamp,
"reason" mediumtext,
PRIMARY KEY ("seq_member_stable_id")
);
@@ -442,7 +442,7 @@ CREATE TABLE "homology_member" (
CREATE TABLE "mapping_session" (
"mapping_session_id" INTEGER PRIMARY KEY AUTOINCREMENT NOT NULL,
"type" enum,
- "when_mapped" timestamp NOT NULL DEFAULT 'current_timestamp()',
+ "when_mapped" timestamp NOT NULL DEFAULT current_timestamp,
"rel_from" integer,
"rel_to" integer,
"prefix" char(4) NOT NULL
diff --git a/modules/t/test-genome-DBs/mus_musculus/core/SQLite/table.sql b/modules/t/test-genome-DBs/mus_musculus/core/SQLite/table.sql
index 618c484df9..4fbd4c8a38 100644
--- a/modules/t/test-genome-DBs/mus_musculus/core/SQLite/table.sql
+++ b/modules/t/test-genome-DBs/mus_musculus/core/SQLite/table.sql
@@ -1,6 +1,6 @@
--
-- Created by SQL::Translator::Producer::SQLite
--- Created on Wed Nov 6 10:36:03 2019
+-- Created on Tue Dec 17 13:11:52 2019
--
BEGIN TRANSACTION;
@@ -476,8 +476,8 @@ CREATE TABLE "mapping_session" (
"new_db_name" varchar(80) NOT NULL DEFAULT '',
"old_release" varchar(5) NOT NULL DEFAULT '',
"new_release" varchar(5) NOT NULL DEFAULT '',
- "old_assembly" varchar(20) NOT NULL DEFAULT '',
- "new_assembly" varchar(20) NOT NULL DEFAULT '',
+ "old_assembly" varchar(80) NOT NULL DEFAULT '',
+ "new_assembly" varchar(80) NOT NULL DEFAULT '',
"created" datetime
);
diff --git a/modules/t/test-genome-DBs/mus_musculus/core/meta.txt b/modules/t/test-genome-DBs/mus_musculus/core/meta.txt
index 64df46e580..95575b6a50 100644
--- a/modules/t/test-genome-DBs/mus_musculus/core/meta.txt
+++ b/modules/t/test-genome-DBs/mus_musculus/core/meta.txt
@@ -192,3 +192,4 @@
1704 \N patch patch_98_99_a.sql|schema_version
1705 \N patch patch_99_100_a.sql|schema_version
1706 \N patch patch_99_100_b.sql|alter_externaldb_type_notnull
+1707 \N patch patch_99_100_c.sql|alter_mapping_session_assembly_length
diff --git a/modules/t/test-genome-DBs/mus_musculus/core/table.sql b/modules/t/test-genome-DBs/mus_musculus/core/table.sql
index d4c3867375..694fe7f52b 100644
--- a/modules/t/test-genome-DBs/mus_musculus/core/table.sql
+++ b/modules/t/test-genome-DBs/mus_musculus/core/table.sql
@@ -420,8 +420,8 @@ CREATE TABLE `mapping_session` (
`new_db_name` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`old_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
`new_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
- `old_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
- `new_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `old_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `new_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`created` datetime DEFAULT NULL,
PRIMARY KEY (`mapping_session_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1 COLLATE=latin1_bin;
@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=1707 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=1708 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
diff --git a/modules/t/test-genome-DBs/nameless/core/SQLite/table.sql b/modules/t/test-genome-DBs/nameless/core/SQLite/table.sql
index 671abdbb2e..d8ca0a6b16 100644
--- a/modules/t/test-genome-DBs/nameless/core/SQLite/table.sql
+++ b/modules/t/test-genome-DBs/nameless/core/SQLite/table.sql
@@ -1,6 +1,6 @@
--
-- Created by SQL::Translator::Producer::SQLite
--- Created on Wed Nov 6 10:36:08 2019
+-- Created on Tue Dec 17 13:11:55 2019
--
BEGIN TRANSACTION;
@@ -465,8 +465,8 @@ CREATE TABLE "mapping_session" (
"new_db_name" varchar(80) NOT NULL DEFAULT '',
"old_release" varchar(5) NOT NULL DEFAULT '',
"new_release" varchar(5) NOT NULL DEFAULT '',
- "old_assembly" varchar(20) NOT NULL DEFAULT '',
- "new_assembly" varchar(20) NOT NULL DEFAULT '',
+ "old_assembly" varchar(80) NOT NULL DEFAULT '',
+ "new_assembly" varchar(80) NOT NULL DEFAULT '',
"created" datetime
);
diff --git a/modules/t/test-genome-DBs/nameless/core/meta.txt b/modules/t/test-genome-DBs/nameless/core/meta.txt
index 39c312be17..10ac39f81c 100644
--- a/modules/t/test-genome-DBs/nameless/core/meta.txt
+++ b/modules/t/test-genome-DBs/nameless/core/meta.txt
@@ -113,3 +113,4 @@
167 \N patch patch_98_99_a.sql|schema_version
168 \N patch patch_99_100_a.sql|schema_version
169 \N patch patch_99_100_b.sql|alter_externaldb_type_notnull
+170 \N patch patch_99_100_c.sql|alter_mapping_session_assembly_length
diff --git a/modules/t/test-genome-DBs/nameless/core/table.sql b/modules/t/test-genome-DBs/nameless/core/table.sql
index 63c28b3252..663e9a0280 100644
--- a/modules/t/test-genome-DBs/nameless/core/table.sql
+++ b/modules/t/test-genome-DBs/nameless/core/table.sql
@@ -410,8 +410,8 @@ CREATE TABLE `mapping_session` (
`new_db_name` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`old_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
`new_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
- `old_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
- `new_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `old_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `new_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`created` datetime DEFAULT NULL,
PRIMARY KEY (`mapping_session_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1 COLLATE=latin1_bin;
@@ -480,7 +480,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=170 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=171 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
diff --git a/modules/t/test-genome-DBs/ontology/ontology/SQLite/table.sql b/modules/t/test-genome-DBs/ontology/ontology/SQLite/table.sql
index 3f73da74ab..8bbd182c6d 100644
--- a/modules/t/test-genome-DBs/ontology/ontology/SQLite/table.sql
+++ b/modules/t/test-genome-DBs/ontology/ontology/SQLite/table.sql
@@ -1,6 +1,6 @@
--
-- Created by SQL::Translator::Producer::SQLite
--- Created on Wed Nov 6 10:36:10 2019
+-- Created on Tue Dec 17 13:11:56 2019
--
BEGIN TRANSACTION;
diff --git a/modules/t/test-genome-DBs/polyploidy/core/SQLite/table.sql b/modules/t/test-genome-DBs/polyploidy/core/SQLite/table.sql
index baa70ca659..9899e52afc 100644
--- a/modules/t/test-genome-DBs/polyploidy/core/SQLite/table.sql
+++ b/modules/t/test-genome-DBs/polyploidy/core/SQLite/table.sql
@@ -1,6 +1,6 @@
--
-- Created by SQL::Translator::Producer::SQLite
--- Created on Wed Nov 6 10:36:15 2019
+-- Created on Tue Dec 17 13:11:59 2019
--
BEGIN TRANSACTION;
@@ -476,8 +476,8 @@ CREATE TABLE "mapping_session" (
"new_db_name" varchar(80) NOT NULL DEFAULT '',
"old_release" varchar(5) NOT NULL DEFAULT '',
"new_release" varchar(5) NOT NULL DEFAULT '',
- "old_assembly" varchar(20) NOT NULL DEFAULT '',
- "new_assembly" varchar(20) NOT NULL DEFAULT '',
+ "old_assembly" varchar(80) NOT NULL DEFAULT '',
+ "new_assembly" varchar(80) NOT NULL DEFAULT '',
"created" datetime
);
diff --git a/modules/t/test-genome-DBs/polyploidy/core/meta.txt b/modules/t/test-genome-DBs/polyploidy/core/meta.txt
index 2c867489de..19548e74ca 100644
--- a/modules/t/test-genome-DBs/polyploidy/core/meta.txt
+++ b/modules/t/test-genome-DBs/polyploidy/core/meta.txt
@@ -168,3 +168,4 @@
248 \N patch patch_98_99_a.sql|schema_version
249 \N patch patch_99_100_a.sql|schema_version
250 \N patch patch_99_100_b.sql|alter_externaldb_type_notnull
+251 \N patch patch_99_100_c.sql|alter_mapping_session_assembly_length
diff --git a/modules/t/test-genome-DBs/polyploidy/core/table.sql b/modules/t/test-genome-DBs/polyploidy/core/table.sql
index dd3f8de10a..906583cc6a 100644
--- a/modules/t/test-genome-DBs/polyploidy/core/table.sql
+++ b/modules/t/test-genome-DBs/polyploidy/core/table.sql
@@ -420,8 +420,8 @@ CREATE TABLE `mapping_session` (
`new_db_name` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`old_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
`new_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
- `old_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
- `new_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `old_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `new_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`created` datetime DEFAULT NULL,
PRIMARY KEY (`mapping_session_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1 COLLATE=latin1_bin;
@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=251 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=252 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
diff --git a/modules/t/test-genome-DBs/test_collection/core/SQLite/table.sql b/modules/t/test-genome-DBs/test_collection/core/SQLite/table.sql
index e434f5580e..dceb106b35 100644
--- a/modules/t/test-genome-DBs/test_collection/core/SQLite/table.sql
+++ b/modules/t/test-genome-DBs/test_collection/core/SQLite/table.sql
@@ -1,6 +1,6 @@
--
-- Created by SQL::Translator::Producer::SQLite
--- Created on Wed Nov 6 10:36:20 2019
+-- Created on Tue Dec 17 13:12:02 2019
--
BEGIN TRANSACTION;
@@ -465,8 +465,8 @@ CREATE TABLE "mapping_session" (
"new_db_name" varchar(80) NOT NULL DEFAULT '',
"old_release" varchar(5) NOT NULL DEFAULT '',
"new_release" varchar(5) NOT NULL DEFAULT '',
- "old_assembly" varchar(20) NOT NULL DEFAULT '',
- "new_assembly" varchar(20) NOT NULL DEFAULT '',
+ "old_assembly" varchar(80) NOT NULL DEFAULT '',
+ "new_assembly" varchar(80) NOT NULL DEFAULT '',
"created" datetime
);
diff --git a/modules/t/test-genome-DBs/test_collection/core/meta.txt b/modules/t/test-genome-DBs/test_collection/core/meta.txt
index be72c192df..48b8e20c70 100644
--- a/modules/t/test-genome-DBs/test_collection/core/meta.txt
+++ b/modules/t/test-genome-DBs/test_collection/core/meta.txt
@@ -188,3 +188,4 @@
230 \N patch patch_98_99_a.sql|schema_version
231 \N patch patch_99_100_a.sql|schema_version
232 \N patch patch_99_100_b.sql|alter_externaldb_type_notnull
+233 \N patch patch_99_100_c.sql|alter_mapping_session_assembly_length
diff --git a/modules/t/test-genome-DBs/test_collection/core/table.sql b/modules/t/test-genome-DBs/test_collection/core/table.sql
index d7ba949c27..4e9624bd6f 100644
--- a/modules/t/test-genome-DBs/test_collection/core/table.sql
+++ b/modules/t/test-genome-DBs/test_collection/core/table.sql
@@ -410,8 +410,8 @@ CREATE TABLE `mapping_session` (
`new_db_name` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`old_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
`new_release` varchar(5) COLLATE latin1_bin NOT NULL DEFAULT '',
- `old_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
- `new_assembly` varchar(20) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `old_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
+ `new_assembly` varchar(80) COLLATE latin1_bin NOT NULL DEFAULT '',
`created` datetime DEFAULT NULL,
PRIMARY KEY (`mapping_session_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1 COLLATE=latin1_bin;
@@ -480,7 +480,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=233 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=234 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
--
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