From ce36d9db5a0e84783e68b925982714bf9c6d036d Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Wed, 17 Feb 2010 13:50:50 +0000
Subject: [PATCH] make sure type is lower case
---
misc-scripts/xref_mapping/XrefParser/BaseParser.pm | 2 ++
1 file changed, 2 insertions(+)
diff --git a/misc-scripts/xref_mapping/XrefParser/BaseParser.pm b/misc-scripts/xref_mapping/XrefParser/BaseParser.pm
index 5fc8ef6a3f..db3c923fe4 100644
--- a/misc-scripts/xref_mapping/XrefParser/BaseParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/BaseParser.pm
@@ -1832,6 +1832,8 @@ sub get_taxonomy_from_species_id{
sub get_direct_xref{
my ($self,$stable_id,$type,$link) = @_;
+ $type = lc($type);
+
my $sql = "select general_xref_id from ${type}_direct_xref d where ensembl_stable_id = ? and linkage_xref= ?";
my $direct_sth = $dbi->prepare($sql);
--
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