diff --git a/modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm index d0262786e5d814f83ea3802a035b0472ea978b65..1d0b5337f1b943d0e5aaf9a21c92b8ec942b38ab 100755 --- a/modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm @@ -193,14 +193,12 @@ SELECT DISTINCT analysis_id FROM %s |; sub feature_classes{ # Can't think of a way to do this programatically, so hard-coded return qw( - AffyFeature DensityFeature DnaAlignFeature Gene PredictionTranscript MarkerFeature - OligoFeature - ProteinAlignFeature + ProteinAlignFeature ProteinFeature QtlFeature RepeatFeature diff --git a/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm index b525a2872aef2e5bca8bfff16e2a942172cbc073..2d93e8723df66f92541485e40c81664552b3c4eb 100755 --- a/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm @@ -298,14 +298,12 @@ sub get_available_adaptors { # Firstly those that just have an adaptor named after there object # in the main DBSQL directory. map( { $_ => "Bio::EnsEMBL::DBSQL::${_}Adaptor" } qw( - AffyFeature AffyArray AffyProbe - Analysis ArchiveStableId Attribute + Analysis ArchiveStableId Attribute AssemblyExceptionFeature AssemblyMapper CoordSystem CompressedSequence DBEntry DnaAlignFeature DensityFeature DensityType Exon Gene KaryotypeBand MiscSet - MiscFeature OligoArray OligoFeature - OligoProbe PredictionTranscript PredictionExon + MiscFeature PredictionTranscript PredictionExon ProteinFeature ProteinAlignFeature RepeatConsensus RepeatFeature Sequence SimpleFeature Slice SupportingFeature Transcript