diff --git a/sql/table.sql b/sql/table.sql index 89693d9a436549084f50f295c38eed4642f4fbcd..a2fa07d4d7ccff4ad05956db963326a550aa8af8 100755 --- a/sql/table.sql +++ b/sql/table.sql @@ -454,7 +454,7 @@ CREATE TABLE alt_allele_attrib ( /** -@table alt_allele_group_id +@table alt_allele_group @desc A minimal table used for tracking unique alt_allele_group_id's. MySQL does not allow multiple autoincrement fields. Further information about a group could be added here at a later date. @column alt_allele_group_id Primary key and only column. @@ -1950,7 +1950,8 @@ CREATE TABLE peptide_archive ( @desc Table structure for seq_region mapping between releases. @column mapping_set_id Primary key, internal identifier. -@column schema_build E.g. 61_37f +@column internal_schema_build Schema version of the current database (eg 72_37) +@column external_schema_build Schema version of the database the comparison was run against (eg 71_37) */ @@ -2146,9 +2147,7 @@ CREATE TABLE external_db ( external_db_id INTEGER UNSIGNED NOT NULL AUTO_INCREMENT, db_name VARCHAR(100) NOT NULL, db_release VARCHAR(255), - status ENUM('KNOWNXREF','KNOWN','XREF','PRED','ORTH', - 'PSEUDO') - NOT NULL, + status ENUM('KNOWNXREF','KNOWN','XREF','PRED','ORTH', 'PSEUDO') NOT NULL, priority INT NOT NULL, db_display_name VARCHAR(255), type ENUM('ARRAY', 'ALT_TRANS', 'ALT_GENE', 'MISC', 'LIT', 'PRIMARY_DB_SYNONYM', 'ENSEMBL'), @@ -2271,8 +2270,7 @@ CREATE TABLE object_xref ( object_xref_id INT(10) UNSIGNED NOT NULL AUTO_INCREMENT, ensembl_id INT(10) UNSIGNED NOT NULL, ensembl_object_type ENUM('RawContig', 'Transcript', 'Gene', - 'Translation', 'Operon', 'OperonTranscript', 'Marker') - NOT NULL, + 'Translation', 'Operon', 'OperonTranscript', 'Marker') NOT NULL, xref_id INT(10) UNSIGNED NOT NULL, linkage_annotation VARCHAR(255) DEFAULT NULL, analysis_id SMALLINT UNSIGNED DEFAULT 0 NOT NULL, @@ -2358,8 +2356,7 @@ CREATE TABLE unmapped_object ( query_score DOUBLE, target_score DOUBLE, ensembl_id INT(10) UNSIGNED DEFAULT '0', - ensembl_object_type ENUM('RawContig','Transcript','Gene','Translation') - DEFAULT 'RawContig', + ensembl_object_type ENUM('RawContig','Transcript','Gene','Translation') DEFAULT 'RawContig', parent VARCHAR(255) DEFAULT NULL, PRIMARY KEY (unmapped_object_id),