From d697112a9daa5e53c23c81ad99adf9003eda092d Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Thu, 9 Mar 2006 20:27:21 +0000
Subject: [PATCH] display_xref_id fix
---
.../xref_mapping/XrefMapper/drosophila_melanogaster.pm | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/misc-scripts/xref_mapping/XrefMapper/drosophila_melanogaster.pm b/misc-scripts/xref_mapping/XrefMapper/drosophila_melanogaster.pm
index f0cefe6fad..641f3866aa 100644
--- a/misc-scripts/xref_mapping/XrefMapper/drosophila_melanogaster.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/drosophila_melanogaster.pm
@@ -61,7 +61,6 @@ sub build_display_xrefs {
print "Building " . lc($type) . " display_xrefs for drosophila\n";
-
my $dir = $self->core->dir();
$self->read_direct_xref_mappings();
@@ -72,6 +71,7 @@ sub build_display_xrefs {
# go through each object/xref mapping and store the best ones as we go along
my %obj_to_best_xref;
+
OBJECT: foreach my $key (keys %XrefMapper::BasicMapper::object_xref_mappings) {
my ($obj_type, $object_id) = split /\|/, $key;
@@ -88,12 +88,12 @@ sub build_display_xrefs {
if ($source) {
if ($source =~ /$first_source/) {
- $XrefMapper::BasicMapper::obj_to_best_xref{$key} = $xref;
+ $obj_to_best_xref{$key} = $xref;
next OBJECT;
}
if ($source =~ /$second_source/) {
- $XrefMapper::BasicMapper::obj_to_best_xref{$key} = $best_xref;
+ $obj_to_best_xref{$key} = $xref;
}
} else {
@@ -106,10 +106,10 @@ sub build_display_xrefs {
open (DX, ">$dir/" . lc($type) . "_display_xref.sql");
open (DX_TXT, ">$dir/" . lc($type) . "_display_xref.txt");
- foreach my $key (keys %XrefMapper::BasicMapper::obj_to_best_xref) {
+ foreach my $key (keys %obj_to_best_xref) {
my ($obj_type, $object_id) = split /\|/, $key;
- my $best_xref = $XrefMapper::BasicMapper::obj_to_best_xref{$key};
+ my $best_xref = $obj_to_best_xref{$key};
# Write record with xref_id_offset
print DX "UPDATE " . lc($type) . " SET display_xref_id=" . ($best_xref+$xref_id_offset) . " WHERE " . lc($type) . "_id=" . $object_id . ";\n";
print DX_TXT ($best_xref+$xref_id_offset) . "\t" . $object_id . "\n";
--
GitLab