From dbcbad4fadb58d3a35b38a65d85364fc426f134b Mon Sep 17 00:00:00 2001
From: Tiago Grego <tgrego@ebi.ac.uk>
Date: Mon, 26 Feb 2018 16:53:04 +0000
Subject: [PATCH] minor documentation update
---
modules/Bio/EnsEMBL/DBSQL/BiotypeAdaptor.pm | 8 ++++----
modules/t/biotype.t | 4 ++--
2 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/BiotypeAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/BiotypeAdaptor.pm
index 86d69c5cef..66693733fd 100644
--- a/modules/Bio/EnsEMBL/DBSQL/BiotypeAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/BiotypeAdaptor.pm
@@ -65,7 +65,7 @@ use parent qw(Bio::EnsEMBL::DBSQL::BaseAdaptor);
Arg [1] : none
Description: PROTECTED implementation of superclass abstract method.
Returns the names, aliases of the tables to use for queries.
- Returntype : list of listrefs of strings
+ Returntype : list of arrays of strings
Exceptions : none
=cut
@@ -99,7 +99,7 @@ sub _columns {
Example : none
Description: PROTECTED implementation of abstract superclass method.
responsible for the creation of ProteinFeatures
- Returntype : listref of Bio::EnsEMBL::Biotype objects
+ Returntype : arrayref of Bio::EnsEMBL::Biotype objects
Exceptions : none
=cut
@@ -174,8 +174,8 @@ sub fetch_by_name_object_type {
The object_type of the biotypes to retrieve (gene or transcript).
Example : $biotypes = $biotype_adaptor->fetch_all_by_object_type('gene');
Description: Retrieves an array reference of biotype objects from the database.
- Returntype : arrayref of Bio::EnsEMBL::Biotype objects or empty array
- Warning : If empty array is to be returned
+ Returntype : arrayref of Bio::EnsEMBL::Biotype objects or empty arrayref
+ Warning : If empty arrayref is to be returned
Exceptions : none
=cut
diff --git a/modules/t/biotype.t b/modules/t/biotype.t
index 4530596551..2de5367999 100644
--- a/modules/t/biotype.t
+++ b/modules/t/biotype.t
@@ -52,8 +52,8 @@ is($biotype1->object_type, 'gene', 'Biotype is from Gene object');
is($biotype1->name, 'protein_coding', 'Biotype name is protein_coding');
is($biotype1->biotype_group, 'coding', 'Biotype group is coding');
is($biotype1->so_acc, 'SO:0001217', 'Biotype protein_coding refers to SO:0001217');
-throws_ok { $biotype1->so_acc('test') } qr/so_acc must be a Sequence Ontology accession/, 'so_acc() requires a SO acc like string';
-throws_ok { $biotype1->object_type('test') } qr/object_type must be gene or transcript/, 'object_type() must be gene or transcript';
+throws_ok { $biotype1->so_acc('test') } qr/so_acc must be a Sequence Ontology accession/, 'so_acc() requires a SO acc like string';
+throws_ok { $biotype1->object_type('test') } qr/object_type must be gene or transcript/, 'object_type() must be gene or transcript';
# test transcript biotype object
my $transcript = $gene->canonical_transcript;
--
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