diff --git a/misc-scripts/xref_mapping/BaseParser.pm b/misc-scripts/xref_mapping/BaseParser.pm index c4f23a004ed4032b9aa245c9ccd093e4805a2a3e..977b3cce84c305569df2efcc5621e115036a36de 100644 --- a/misc-scripts/xref_mapping/BaseParser.pm +++ b/misc-scripts/xref_mapping/BaseParser.pm @@ -9,6 +9,7 @@ use POSIX qw(strftime); use SwissProtParser; use RefSeqParser; +use RefSeqGPFFParser; my $host = "ecs1g"; my $port = 3306; @@ -178,8 +179,8 @@ sub upload_xrefs { foreach my $syn (@{$xref->{SYNONYMS}}) { $xref_sth->execute($syn, - $xref->{LABEL}, - $xref->{DESCRIPTION}, + "", + "", $xref->{SOURCE_ID}, $xref->{SPECIES_ID});